feat: update to Python 3.14

.binder/Dockerfile

@@ -36,4 +36,4 @@ RUN chown -R 1000 ${HOME}
 RUN chown -R 1000 ${HOME}/.*
 USER jovyan
 WORKDIR ${HOME}
-RUN pip install -e .[fourc,dev]
+RUN pip install -e .[dev]

.github/actions/code_check/action.yml

@@ -7,7 +7,7 @@ runs:
       shell: bash
       run: |
         cd ${GITHUB_WORKSPACE}
-        pip install -e .[dev,fourc]
+        pip install -e .[dev]
         pre-commit install --install-hooks
         if [ "${GITHUB_REF}" = "refs/heads/main" ]; then
           SKIP=no-commit-to-branch pre-commit run --all-files

.github/actions/install_beamme/action.yml

@@ -4,7 +4,7 @@ inputs:
   install-command:
     description: Command to install BeamMe with pip
     required: false
-    default: ".[cubitpy,dev,fourc]"
+    default: ".[dev]"
 runs:
   using: composite
   steps:

.github/actions/setup_python_environment/action.yml

@@ -5,7 +5,7 @@ inputs:
   python-version:
     description: "Python version to use"
     required: false
-    default: "3.13"
+    default: "3.14"
 
   env_type:
     description: "Environment type: `conda`, `venv` or `system`" # on Windows `bash -l {0}` shell is required for conda environments

.github/actions/source_distribution_build/action.yml

@@ -7,7 +7,7 @@ runs:
     - name: Setup python environment
       uses: ./.github/actions/setup_python_environment
       with:
-        python-version: "3.13"
+        python-version: "3.14"
         env_type: venv
 
     - name: Install build tool

.github/actions/wheel_test/action.yml

@@ -27,7 +27,7 @@ runs:
 
     - name: Install wheel under test
       shell: bash
-      run: pip install "$(echo wheelhouse/*cp${PYTAG}*.whl)[cubitpy,dev,fourc]"
+      run: pip install "$(echo wheelhouse/*cp${PYTAG}*.whl)[dev]"
 
     - name: Run test suite and upload results on failure
       uses: ./.github/actions/run_tests

.github/workflows/build_sdist_build_test_wheels_PR_and_merge.yml

@@ -21,7 +21,7 @@ jobs:
         uses: ./.github/actions/source_distribution_build
 
   build-test-wheels:
-    name: build-test-wheel python 3.13 on ${{ matrix.os }}
+    name: build-test-wheel python 3.14 on ${{ matrix.os }}
     runs-on: ${{ matrix.os }}
     strategy:
       fail-fast: false
@@ -34,10 +34,21 @@ jobs:
       - name: Build wheels
         uses: ./.github/actions/wheel_build
         with:
-          python-version: "3.13"
-          wheel-name: wheels-${{ matrix.os }}-py3.13
+          python-version: "3.14"
+          wheel-name: wheels-${{ matrix.os }}-py3.14
       - name: Test wheels
         uses: ./.github/actions/wheel_test
         with:
-          python-version: "3.13"
-          wheel-name: wheels-${{ matrix.os }}-py3.13
+          python-version: "3.14"
+          wheel-name: wheels-${{ matrix.os }}-py3.14
+
+  all-build-wheels-pass:
+    name: All build wheels passed
+    runs-on: ubuntu-latest
+    needs: [build-src-dist, build-test-wheels]
+    if: always()
+    steps:
+      - name: Check build wheels result
+        uses: re-actors/alls-green@release/v1
+        with:
+          jobs: ${{ toJSON(needs) }}

.github/workflows/build_sdist_build_test_wheels_nightly_and_publish_release.yml

@@ -25,7 +25,7 @@ jobs:
       fail-fast: false
       matrix:
         os: [ubuntu-latest, macos-latest, windows-latest]
-        python-version: ["3.10", "3.11", "3.12", "3.13"]
+        python-version: ["3.11", "3.12", "3.13", "3.14"]
 
     steps:
       - name: Checkout code

.github/workflows/documentation.yml

@@ -24,7 +24,7 @@ jobs:
       - name: Install dependencies
         run: |
           cd ${GITHUB_WORKSPACE}
-          pip install -e .[dev,fourc]
+          pip install -e .[dev]
       - name: Build API documentation
         run: |
           pdoc --math --docformat google --output-dir api-documentation src/beamme/

.github/workflows/testing.yml

@@ -20,7 +20,7 @@ jobs:
       fail-fast: false
       matrix:
         os-version: [ubuntu-latest, macos-latest, windows-latest]
-        python-version: ["3.10", "3.13"]
+        python-version: ["3.11", "3.14"]
     runs-on: ${{ matrix.os-version }}
     steps:
       - name: Checkout PR code
@@ -32,15 +32,25 @@ jobs:
       - name: Install BeamMe
         uses: ./.github/actions/install_beamme
         with:
-          # Test coverage and editable install with Python 3.10, otherwise we use a
+          # Test coverage and editable install with Python 3.11, otherwise we use a
           # non-editable installation and turn off coverage, because the coverage
           # only works in editable mode.
           install-command: >-
-            ${{ matrix.python-version == '3.10' && '-e .[cubitpy,dev,fourc]' || '.[cubitpy,dev,fourc]'}}
+            ${{ matrix.python-version == '3.11' && '-e .[dev]' || '.[dev]'}}
       - name: Run the test suite and upload results on failure
         uses: ./.github/actions/run_tests
         with:
           # The single space in the empty string is required, otherwise GitHub
           # evaluates the if clause wrong.
-          additional-pytest-flags: >-
-            ${{ matrix.python-version == '3.10' && ' ' || '--no-cov' }}
+          additional-pytest-flags: "${{ matrix.python-version == '3.11' && ' ' || '--no-cov' }}"
+
+  all-tests-pass:
+    name: All tests passed
+    runs-on: ubuntu-latest
+    needs: [beamme-testing-from-source-code]
+    if: always()
+    steps:
+      - name: Check test matrix result
+        uses: re-actors/alls-green@release/v1
+        with:
+          jobs: ${{ toJSON(needs) }}

.github/workflows/testing_protected.yml

@@ -48,7 +48,7 @@ jobs:
       - name: Install BeamMe
         uses: ./.github/actions/install_beamme
         with:
-          install-command: "-e .[cubitpy,dev,fourc]"
+          install-command: "-e .[dev]"
       - name: Setup cubit
         id: cubit
         uses: ./.github/actions/cubit_setup

.github/workflows/website.yml

@@ -24,7 +24,7 @@ jobs:
       - name: Setup python environment
         uses: ./.github/actions/setup_python_environment
         with:
-          python-version: '3.13'
+          python-version: '3.14'
       - name: Install dependencies
         run: |
           pip install -r website/requirements.txt

.pre-commit-config.yaml

@@ -1,9 +1,9 @@
 repos:
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v5.0.0
+    rev: v6.0.0
     hooks:
       - id: check-added-large-files
-        args: ['—-maxkb=1000']
+        args: ['--maxkb=1000']
         name: Check for added large files
       - id: check-ast
         name: Check Python files for parse errors
@@ -37,24 +37,24 @@ repos:
       - id: trailing-whitespace
         name: Check for trailing whitespaces
   - repo: https://github.com/PyCQA/bandit
-    rev: 1.8.0
+    rev: 1.9.4
     hooks:
       - id: bandit
         name: Run bandit (security linter for python)
         args: ["--configfile", "pyproject.toml", "--exclude", "tests/*"]
         additional_dependencies: ["bandit[toml]"]
   - repo: https://github.com/pre-commit/mirrors-clang-format
-    rev: v19.1.5
+    rev: v22.1.5
     hooks:
       - id: clang-format
         name: Run clang-format (C/C++ formatter)
         types_or: [c, c++]
   - repo: https://github.com/PyCQA/docformatter
-    rev: "eb1df347edd128b30cd3368dddc3aa65edcfac38" # change back to version once bug is fixed in latest version to be compatible with pre-commit
+    rev: v1.7.8
     hooks:
       - id: docformatter
         name: Run docformatter (formatter for docstrings)
-        args: ["--in-place", "--config=./pyproject.toml", "-r", "src/beamme/", "tests/"]
+        args: ["--in-place", "--black", "--config=./pyproject.toml", "-r", "src/beamme/", "tests/"]
   - repo: https://github.com/econchick/interrogate
     rev: 1.7.0
     hooks:
@@ -63,19 +63,19 @@ repos:
         args: [--fail-under=100, --ignore-init-module, --style=google, -vv]
         exclude: ^website/
   - repo: https://github.com/pre-commit/mirrors-mypy
-    rev: v1.13.0
+    rev: v2.1.0
     hooks:
       - id: mypy
         name: Run mypy (static type checker for python)
         args: ["--install-types", "--non-interactive", "--ignore-missing-imports", "--follow-imports=silent"]
         exclude: "^website/"
   - repo: https://github.com/kynan/nbstripout
-    rev: 0.8.1
+    rev: 0.9.1
     hooks:
       - id: nbstripout
         name: Run nbstripout (strip output from Jupyter notebooks)
   - repo: https://github.com/Lucas-C/pre-commit-hooks
-    rev: v1.5.5
+    rev: v1.5.6
     hooks:
       - id: insert-license
         name: Insert license header (//)
@@ -102,15 +102,15 @@ repos:
       - id: removestar
         name: Run removestar (remove wildcard imports)
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.8.2
+    rev: v0.15.20
     hooks:
       - id: ruff # linter
         name: Run ruff (linter for Python)
         args: ["--fix", "--select", "I,TID252,F401"] # "I => sort imports, TID252 => ban relative imports, F401 => unused imports"
       - id: ruff-format # formatter
         name: Run ruff (formatter for Python)
   - repo: https://github.com/crate-ci/typos
-    rev: v1.28.4
+    rev: v1.48.0
     hooks:
       - id: typos
         name: Run typo checker
@@ -122,7 +122,7 @@ repos:
         name: Run xml-formatter
         args: [--indent, "2", --indent-char, " ", --selfclose, --overwrite, --eof-newline]
   - repo: https://github.com/google/yamlfmt
-    rev: v0.14.0
+    rev: v0.21.0
     hooks:
       - id: yamlfmt
         name: Run yamlfmt

.typos.toml

@@ -1,4 +1,7 @@
-# exlude the following words from the typos pre-commit hook
+# exclude the following words from the typos pre-commit hook
+
+[default.extend-words]
+DISCRET = "DISCRET" # in 4C yaml input files
 
 [default.extend-identifiers]
 _NDArray = "_NDArray"

README.md

@@ -219,11 +219,11 @@ interaction, <https://athene-forschung.unibw.de/143755>, (2022)</span>
 
 ### Python environment
 
-BeamMe is tested with, and supports Python versions 3.10-3.13. It is recommended to use a virtual Python environment such as [Conda](https://anaconda.org/anaconda/conda)/[Miniforge](https://conda-forge.org/download/) or [venv](https://docs.python.org/3/library/venv.html).
+BeamMe is tested with, and supports Python versions 3.11-3.14. It is recommended to use a virtual Python environment such as [Conda](https://anaconda.org/anaconda/conda)/[Miniforge](https://conda-forge.org/download/) or [venv](https://docs.python.org/3/library/venv.html).
 - A [Conda](https://anaconda.org/anaconda/conda)/[Miniforge](https://conda-forge.org/download/) environment can be created and loaded with
   ```bash
   # Create the environment (this only has to be done once)
-  conda create -n beamme python=3.13
+  conda create -n beamme python=3.14
   # Activate the environment
   conda activate beamme
   ```
@@ -243,7 +243,7 @@ You can quickly install BeamMe into your current environment using pip:
 pip install beamme
 ```
 
-Optional dependencies (for development and extra features) can be installed with: `pip install "beamme[cubitpy,dev,fourc]"`
+Optional dependencies (for development and extra features) can be installed with: `pip install "beamme[dev]"`
 > **Note:** On Zsh, you may need to quote the brackets as shown to avoid shell expansion.
 
 ### Install BeamMe from GitHub (most recent version)
@@ -315,9 +315,9 @@ make -j4
 
 ## Developing BeamMe
 
-If you want to actively develop BeamMe or run the test suite, you must install BeamMe in _editable_ (`-e`) mode and with our optional developer dependencies (`[dev,fourc]`) like
+If you want to actively develop BeamMe or run the test suite, you must install BeamMe in _editable_ (`-e`) mode and with our optional developer dependencies (`[dev]`) like
 ```bash
-pip install -e ".[dev,fourc]" # Quotation marks are required for some shells
+pip install -e ".[dev]" # Quotation marks are required for some shells
 ```
 You can now run the BeamMe test suite to check that everything worked as expected
 ```bash

examples/example_1_finite_rotations.ipynb

@@ -419,7 +419,7 @@
     "\n",
     "rotation = Rotation([1, 2, 3], np.pi / 6.0)\n",
     "lambda_sr = smallest_rotation(rotation, [1, 0.5, 0])\n",
-    "print(f\"First basis vector of lambda_sr: {lambda_sr * [1,0,0]}\")"
+    "print(f\"First basis vector of lambda_sr: {lambda_sr * [1, 0, 0]}\")"
    ]
   },
   {

examples/utils/example_1_utils.py

@@ -41,7 +41,6 @@ def print_rotation_matrix(name, rotation):
 
 def add_cube_plot(plotter, row, col, rotation, text, *, plot_outlines=True):
     """Add a cube to the plotter."""
-
     plotter.subplot(row, col)
 
     # Define and optionally plot the original cube
@@ -114,15 +113,13 @@ def __init__(self, *args, **kwargs):
 
     def __enter__(self):
         """Return the plotter with the given arguments."""
-
         self.plotter = pv.Plotter(*self.args, **self.kwargs)
         return self.plotter
 
     def __exit__(self, exc_type, exc_value, traceback):
         """When exiting the with statement, call this function.
 
-        We show the plotter (except during testing and we reset the
-        console print out).
+        We show the plotter (except during testing and we reset the console print out).
         """
         if not is_testing():
             self.plotter.show()

pyproject.toml

@@ -5,6 +5,7 @@ build-backend = "setuptools.build_meta"
 [project]
 name = "BeamMe"
 description = "BeamMe: A general purpose 3D beam finite element input generator"
+requires-python = ">=3.11"
 authors = [{name = "BeamMe Authors"}]
 maintainers = [
   {name = "Ivo Steinbrecher", email = "ivo.steinbrecher@unibw.de"},
@@ -41,6 +42,8 @@ cubitpy = [
 ]
 fourc = ["fourcipp"]
 dev = [
+  "beamme[cubitpy]",
+  "beamme[fourc]",
   "coverage",
   "genbadge[coverage]",
   "pdoc",

src/beamme/abaqus/__init__.py

@@ -19,5 +19,4 @@
 # LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
 # OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
 # THE SOFTWARE.
-"""This module defines classes and functions to create an Abaqus beam input
-file."""
+"""This module defines classes and functions to create an Abaqus beam input file."""

src/beamme/abaqus/beam.py

@@ -26,8 +26,9 @@
 
 
 def generate_abaqus_beam(beam_type: str):
-    """Return a class representing a beam in Abaqus. This class can be used in
-    the standard mesh generation functions.
+    """Return a class representing a beam in Abaqus.
+
+    This class can be used in the standard mesh generation functions.
 
     Args:
         beam_type: Abaqus identifier for this beam element. For more details,
@@ -37,7 +38,6 @@ def generate_abaqus_beam(beam_type: str):
         A class representing the Abaqus beam element. The class inherits from
         the BeamX class, depending on the number of nodes.
     """
-
     if not beam_type[0].lower() == "b":
         raise TypeError("Could not identify the given Abaqus beam element")