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Upgrade 4.3.5#123

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sjanssen2 wants to merge 5 commits into
biocore:masterfrom
sjanssen2:upgrade_4.3.5
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Upgrade 4.3.5#123
sjanssen2 wants to merge 5 commits into
biocore:masterfrom
sjanssen2:upgrade_4.3.5

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@sjanssen2
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upgrade to Siavash's newer release 4.3.5, which basically now

  • checks for name collisions between input fragments and reference.
  • Furthermore, it supports detailed debugging information printed to STDOUT and
  • adopted the two step computation (1. generation of placements, 2. merging placements into tree)

@sjanssen2
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Hi @mortonjt this repo is a mess and basically impossible to have passing Travis tests. I made changed to my fragment-insertion recipe, but Deblur fails to build here. Could you maybe just merge my PR? The packages can be successfully build and I uploaded them to anaconda/biocore already.

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