OmniSTORM

OmniSTORM is a MATLAB app for STORM super-resolution microscopy, featuring a GUI and GPU acceleration.

The GPU acceleration only supports Windows platform and Nvidia GPUs.

Install

OmniSTORM requires MATLAB R2024a or higher.

Download OmniSTORM-vXX.mlappinstall from Releases and run it.

Run from Source

1. Add Functions and ThirdParty and subfolders to MATLAB PATH
2. Double-click OmniSTORM.mlapp in the file explorer, or open it in MATLAB.
3. Click "Load Image" if the raw image is a single file; Click "Load Multi-File Image" if the image are multiple files in a folder. Supported format: TIFF and DCIMG.
4. Click "Run".
5. If the number of emitters are too many or too few, adjust the Threshold.

Credits

OmniSTORM is based on the following research and open-source projects:

• WindSTORM: Robust online image processing for high-throughput nanoscopy
• Toward drift-free high-throughput nanoscopy through adaptive intersection maximization (AIM)
• Parameter-free image resolution estimation based on decorrelation analysis
• Single image Fourier Ring Correlation (1frc)
• cellSTORM - Cost-effective Super-Resolution on a Cellphone using dSTORM

OmniSTORM also depends on the following GitHub repositories developed by the author:

• dcimg-reader: DCIMG image reader MEX function
• sonic-cuda: GPU-accelerated localization-based super-resolution MEX function