Dev - #4992

Merged

hanars merged 46 commits into

Sep 5, 2025

Commits on Aug 22, 2025

move test fixtures from hail folder to clickhouse
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e03fdd3
update test import
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a49373c

Commits on Aug 27, 2025

first pass isoform expression
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bdc8795

Commits on Aug 28, 2025

Merge branch 'dev' of https://github.com/broadinstitute/seqr into gtext-transcript-isoform
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3133f6b
fix axis render
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414cfb6
fix cell height
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8c45ecf
actually ender isoform
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7bc9596
fix order
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2462421
combine files
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b807064
shared utility for viloin plot
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32264af
shared isoform render logic
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e024b8c

Commits on Sep 2, 2025

Merge branch 'dev' of https://github.com/broadinstitute/seqr into gtext-transcript-isoform
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aafac45
render gtex tabs
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01ea491
fix scale
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281167d
clean up
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ae58f94
Revert "clean up"
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dd99651
remove unused dag triggers
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d76b89b
remve airflow from deactivate project
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81ae3b5
remove dag trigger from transfer families
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0214885
remove generic airflow dag triggering
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aac7192
placeholder delete family function
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7da9d9f
clean up
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e553a2a
clean up
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4aeb6e4

Commits on Sep 3, 2025

fix manage command tests
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52805df
fix dag trigger tests
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006e5c1
Merge branch 'dev' of https://github.com/broadinstitute/seqr into remove-hail-test-fixtures
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c27e1b9
fix pop af values
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cf49c14
Merge branch 'dev' of https://github.com/broadinstitute/seqr into deprecate-dag-trigger
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68e6061
properly handle gcnv dataset type inn delete triggger
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e4b9011
Merge pull request #4983 from broadinstitute/remove-hail-test-fixtures
hanars
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f7a16fd
Merge pull request #4980 from broadinstitute/deprecate-dag-trigger
hanars
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3eeba3d
Merge pull request #4977 from broadinstitute/gtext-transcript-isoform
hanars
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bf942bb

Commits on Sep 4, 2025

get all keys for snv indel saved variants
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974943c
use model manager filter
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6ee0586
fix fixture data
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0c0ac09
clean up
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8696fac

Commits on Sep 5, 2025

only search for x chromosome comp hets in families without males
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488f28b
fix liftover id filtering
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8db8f61
restructure to allow lifted lookup
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7c7bf2d
abstract run liftover
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6406e86
run liftover for missing lookup variant
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b58845f
test liftover
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d16fe32
Merge pull request #4988 from broadinstitute/x-chrom-comp-het-male
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ac3c4e1
remove unneeded global
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d497def
Merge pull request #4987 from broadinstitute/gene-saved-variants
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4d743fe
Merge pull request #4990 from broadinstitute/lookup-genome-build-agnostic
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12e203f