Dev - #5049

Merged

hanars merged 87 commits into

Sep 29, 2025

Commits on Sep 18, 2025

no call UI toggle
hanars
committed
0e6c7b5
implement no call override
hanars
committed
ef7281d
test no call inheritance override
hanars
committed
980bde2
no call override quality
hanars
committed
d30ac27
test no call quality filter
hanars
committed
a0db6ed
add ui option
hanars
committed
5e5600d

Commits on Sep 19, 2025

add server side constants
hanars
committed
decce66
base class implementation of clinvar filter
hanars
committed
3467081
implement conflicting override
hanars
committed
7ebbe1b
update saved searches
hanars
committed
93f7481
unit tests
hanars
committed
37a5eb0
add ui filter
hanars
committed
d1fa127
implement alphamissense filter
hanars
committed
5ca3196
score filter hover
hanars
committed
d2c5819
clean up
hanars
committed
b54743b
unit tests
hanars
committed
0fa57ab
add exclude search toggle to ui
hanars
committed
a0cf1b2
first pass exclude results
hanars
committed
a32d96f
handle comp hets and multi data type
hanars
committed
586d60d
share utility method
hanars
committed
f403bdf

Commits on Sep 22, 2025

todo
hanars
committed
9af6f89
Merge branch 'dev' of https://github.com/broadinstitute/seqr into conflicting-clinvar-search
hanars
committed
33f1ac7
override up to likely path
hanars
committed
469b939
fix test
hanars
committed
2d8deec
properly set search has in ui search
hanars
committed
5ba8d76
use updated search model
hanars
committed
8081ddb
fix comp het pair filter
hanars
committed
3a40c05
test search model creation
hanars
committed
cc2f411
test previous does nothing for es search
hanars
committed
e41ca89
test exclude cached previous results
hanars
committed
2c05143
enable all clickhouse data management pages
hanars
committed
45b4f19

Commits on Sep 25, 2025

Merge pull request #5029 from broadinstitute/no-call-inheritance
hanars
authored
eaf77f1
Merge pull request #5034 from broadinstitute/alphamissense-filter
hanars
authored
5ed04c0
Merge pull request #5037 from broadinstitute/pipeline-ui-seqr-page
hanars
authored
b80cbd7
clearer trigger delete ui
hanars
committed
65d6036
disable search samples on trigger delete
hanars
committed
8174297
better info message
hanars
committed
a092d68
remove duplicate manage command
hanars
committed
33e6fbd
Merge branch 'dev' of https://github.com/broadinstitute/seqr into exclude-current-search-results
hanars
committed
eec762e
unit test clickhouse
hanars
committed
3d0c5e1
fix js test
hanars
committed
84e7e57
codacy
hanars
committed
d2469d3
fix test
hanars
committed
ff96798
clean up imports
hanars
committed
7e1d821
clean up
hanars
committed
58a2028
fix syntax
hanars
committed
2337851
fix mocks
hanars
committed
3ac7f03
helper function
hanars
committed
a51b934
remove ui option for skip validation on data loading
hanars
committed
4907e89
flag places where need update
hanars
committed
934fa10
Merge pull request #5043 from broadinstitute/post-backend-cleanup-codacy
hanars
authored
8d84496
Merge pull request #5044 from broadinstitute/no-skip-validation-ui
hanars
authored
745f20f
store gene ids on saved variant model
hanars
committed
6964852
sort gene transcripts
hanars
committed
781ac85
set gene ids for new saved variants
hanars
committed
a72dbfc
update fixtures
hanars
committed
e2329bb

Commits on Sep 26, 2025

fix migration output field
hanars
committed
494c1ff
update saved variant gene filter
hanars
committed
e732f35
clean up family discovery genes
hanars
committed
737cb20
fix tests
hanars
committed
47e8f9f
remove clickhosue call from matchmaker summary
hanars
committed
79d65e8
clean up all discovery genes
hanars
committed
12c561d
Merge pull request #5041 from broadinstitute/delete-search-functionality-cleanup
hanars
authored
8397e82
Merge pull request #5035 from broadinstitute/conflicting-clinvar-search
hanars
authored
e3e7df1
Merge branch 'dev' of https://github.com/broadinstitute/seqr into saved-variant-gene-ids
hanars
committed
8373754
minimize clickhosue calls for gene notes
hanars
committed
699709c
report cleanup
hanars
committed
24d7e4a
set gene ids for bulk aip
hanars
committed
1611f36
set gene ids on bulk create gregor
hanars
committed
6838759
cleanup
hanars
committed
e91f919
changelog
hanars
committed
52c94b7
distict for migration
hanars
committed
1707321
fail file iter when error occurs
hanars
committed
af0f51b
update tests
hanars
committed
de904a3
fix test
hanars
committed
ce7122a
clean up sv id mapping for set key
hanars
committed
2fa6d1d
remove unused import
hanars
committed
35cabcc

Commits on Sep 29, 2025

remove unused code
hanars
committed
6a796f3
fix unit test image
hanars
committed
a1fd37e
Merge pull request #5042 from broadinstitute/exclude-current-search-results
hanars
authored
ac2156a
Merge pull request #5046 from broadinstitute/show-error-when-file-iter-fails
hanars
authored
72de526
Merge pull request #5047 from broadinstitute/set-variant-key-sv-cleanup
hanars
authored
22ccdea
use correct field for querying sample remap
hanars
committed
c8a3631
Merge branch 'dev' of https://github.com/broadinstitute/seqr into saved-variant-gene-ids
hanars
committed
c656167
Merge pull request #5045 from broadinstitute/saved-variant-gene-ids
hanars
authored
4661f97
Merge pull request #5048 from broadinstitute/airtable-remap-issue
hanars
authored
fcee374
bump changelog
hanars
committed
6fada88