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Dev - #5377

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hanars merged 42 commits into
masterfrom
dev
Apr 7, 2026
Merged

Dev#5377
hanars merged 42 commits into
masterfrom
dev

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@hanars

@hanars hanars commented Apr 7, 2026 •
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  • All unit test are passing and coverage has not substantively dropped
  • No new dependency vulnerabilities have been introduced
  • Any changes to the docker image have been vetted for potential vulnerabilities and privacy implications
  • If any python requirements are updated, they are noted and here and will be updated before deploying:
  • Any database migrations are noted here, and will be run before deploying:
    • adds new RNA tissue type
  • All major changes are recorded in the changelog, and the changelog has been updated to reflect the latest release
  • Any new endpoints are explicitly tested to ensure they are only accessible to correctly permissioned users
  • No secrets have been committed
  • Any changes to environment variables or secrets are noted here, and will properly configured before deploying:
  • The following charts will be updated as part of this release:
    • seqr
    • vlm

hanars added 30 commits March 20, 2026 18:22
@hanars
move annotation dataset type filtering into the managers
d8d58cf
@hanars
move other dataset type filtering into manager
a2e08b2
@hanars
exclude sv clean up
61afe8a
@hanars
fetch sample data per dtataset type
818f780
@hanars
Merge branch 'dev' of https://github.com/broadinstitute/seqr into sea…
f5176e3 
…rch-sample-clean-up
@hanars
seaparte locus filter step
55e096f
@hanars
separate annotations parsing
a44580f
@hanars
multi type cleanup
673db5d
@hanars
fix agg
f1cee06
@hanars
fix x-linked recessive
12f09ea
@hanars
fix multi dt comp het
ff4c7a9
@hanars
fix location search
793e9b7
@hanars
fix no access project search
223cd6c
@hanars
fix new sv filtering
ac0f607
@hanars
fix validation
5ef58f8
@hanars
fix sv type validation
ed76899
@hanars
fix mito type validation
1a7a059
@hanars
Merge branch 'search-cache-cleanup' of https://github.com/broadinstit…
d427e7d 
…ute/seqr into search-sample-clean-up
@hanars
shared helper for single variant search
2b9b159
@hanars
clean up
535cec2
@hanars
clean up
5d4465b
@hanars
Merge branch 'shared-search-helper-func' of https://github.com/broadi…
498d87e 
…nstitute/seqr into search-sample-clean-up
@hanars
fix prioritized tagging
68ee8ba
@hanars
variant lookup clean up
9140e96
@hanars
clean up
4b21ce4
@hanars
clean up
1291feb
@hanars
Merge branch 'shared-search-helper-func' of https://github.com/broadi…
06f0c9f 
…nstitute/seqr into search-sample-clean-up
@hanars
Merge branch 'shared-search-helper-func' of https://github.com/broadi…
175fe0b 
…nstitute/seqr into search-sample-clean-up
@hanars
Merge branch 'dev' of https://github.com/broadinstitute/seqr into sea…
f2f455e 
…rch-sample-clean-up
@hanars
clean up
17683d2
hanars and others added 12 commits March 26, 2026 11:23
@hanars
clean up
c1c5732
@hanars
Merge branch 'dev' of https://github.com/broadinstitute/seqr into sea…
3bee937 
…rch-sample-clean-up
@hanars
clean up
8e53c81
@dependabot
Bump node-forge from 1.3.2 to 1.4.0 in /ui
e367b49 
Bumps [node-forge](https://github.com/digitalbazaar/forge) from 1.3.2 to 1.4.0.
- [Changelog](https://github.com/digitalbazaar/forge/blob/main/CHANGELOG.md)
- [Commits](digitalbazaar/forge@v1.3.2...v1.4.0)

---
updated-dependencies:
- dependency-name: node-forge
  dependency-version: 1.4.0
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>
@hanars
Merge pull request #5369 from broadinstitute/dependabot/npm_and_yarn/…
8f08c1b 
…ui/node-forge-1.4.0

Bump node-forge from 1.3.2 to 1.4.0 in /ui
@hanars
add rna tissue type options;
9f58b3b
@hanars
Merge pull request #5370 from broadinstitute/rna-tissue-additions
16064c1 
add rna tissue type options;
@hanars
Merge pull request #5360 from broadinstitute/search-sample-clean-up
bcd06ad 
Search dataset type clean up
@hanars
fix selector
ec53a99
@hanars
fix gene lookup blank page
1b93bbe
@hanars
Merge pull request #5376 from broadinstitute/gene-lookup-blank-page
8daeafe 
fix gene lookup blank page
@hanars
Merge pull request #5375 from broadinstitute/project-loaded-data-summ…
22ad5ac 
…ary-bug

fix loaded data families selector
@hanars
hanars merged commit d0e5b2b into master Apr 7, 2026
15 of 17 checks passed
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@hanars