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Dev - #5407

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hanars merged 49 commits into
masterfrom
dev
Apr 27, 2026
Merged

Dev#5407
hanars merged 49 commits into
masterfrom
dev

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@hanars

@hanars hanars commented Apr 27, 2026 •
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  • All unit test are passing and coverage has not substantively dropped
  • No new dependency vulnerabilities have been introduced
  • Any changes to the docker image have been vetted for potential vulnerabilities and privacy implications
  • If any python requirements are updated, they are noted and here and will be updated before deploying:
  • Any database migrations are noted here, and will be run before deploying:
  • All major changes are recorded in the changelog, and the changelog has been updated to reflect the latest release
  • Any new endpoints are explicitly tested to ensure they are only accessible to correctly permissioned users
  • No secrets have been committed
  • Any changes to environment variables or secrets are noted here, and will properly configured before deploying:
  • The following charts will be updated as part of this release:
    • seqr
    • vlm

hanars added 30 commits March 18, 2026 13:18
@hanars
flag ui needs for saved variants
a46d5ad
@hanars
Merge branch 'dev' of https://github.com/broadinstitute/seqr into sav…
272b1a1 
…ed-variant-annotation-separation
@hanars
clean up saved variant json responses
74206d4
@hanars
ui clean up
5d43732
@hanars
fix mme cdefault email
3abb1e8
@hanars
fix metadata response
0980098
@hanars
fix test field expectation
9557f46
@hanars
more resiliency
1d695cc
@hanars
fix test
ff4dfbb
@hanars
fix ui fixture data
49d818b
@hanars
return variants by id
dce3812
@hanars
fix saved variant display
cbd04f1
@hanars
clean up lookup response
c358bc8
@hanars
Merge branch 'dev' of https://github.com/broadinstitute/seqr into sav…
82acb55 
…ed-variant-annotation-separation
@hanars
search results display
e085fdc
@hanars
fix clickhouse tests
0ca6e53
@hanars
Merge branch 'dev' of https://github.com/broadinstitute/seqr into sav…
62afb43 
…ed-variant-annotation-separation
@hanars
fix clickhouse tests
c2e4bfe
@hanars
fix summary data tests
67b5b30
@hanars
fix saved variant tests
f5570cc
@hanars
fix ui tests
10d9eed
@hanars
codacy
952e4b2
@hanars
copilot feedback
25325c8
@hanars
fix linting
fbd9bd7
@hanars
Merge branch 'dev' of https://github.com/broadinstitute/seqr into sav…
6f1a2d3 
…ed-variant-annotation-separation
@hanars
correctly delete 38 project data
9b66a58
@hanars
consistently partition tables in test dbs;
a8a38f4
@hanars
better error grouping for vlm errors
564e15a
@hanars
Merge pull request #5395 from broadinstitute/better-vlm-error
bf4cbf5 
better error grouping for vlm errors
@hanars
Merge branch 'dev' of https://github.com/broadinstitute/seqr into fix…
15ce3e4 
…-delete-project
hanars and others added 19 commits April 21, 2026 13:28
@hanars
clear error message for local users with different partitioning
c9f6c3b
@hanars
fix behavior for callset ac validation
0a19f89
@hanars
Merge pull request #5400 from broadinstitute/ac-freq-validation-fix
3ba6bb5 
fix behavior for callset ac validation
@hanars
Merge pull request #5394 from broadinstitute/fix-delete-project
6c2bcff 
Fix delete project
@hanars
Merge pull request #5371 from broadinstitute/saved-variant-annotation…
8af26ab 
…-separation

Saved variant annotation separation
@hanars
add missing inheritance mode to prioritized search
7707dd6
@hanars
fix duplicate display for comp het variants
1c2bf87
@hanars
fix download for searches with external projects
ea94314
@hanars
clean up
db04847
@hanars
compute family structure for individuals with loaded data
8af52eb
@hanars
clear error message when user searches for genome build with no loade…
f884514 
…d data
@hanars
fix no access search
3008bfa
@dependabot
Bump postcss from 8.4.31 to 8.5.10 in /ui
cebcb55 
Bumps [postcss](https://github.com/postcss/postcss) from 8.4.31 to 8.5.10.
- [Release notes](https://github.com/postcss/postcss/releases)
- [Changelog](https://github.com/postcss/postcss/blob/main/CHANGELOG.md)
- [Commits](postcss/postcss@8.4.31...8.5.10)

---
updated-dependencies:
- dependency-name: postcss
  dependency-version: 8.5.10
  dependency-type: direct:development
...

Signed-off-by: dependabot[bot] <support@github.com>
@hanars
Merge pull request #5405 from broadinstitute/all-genome-version-no-ac…
47e4923 
…cess-error

clear error message when search on build with no loaded data
@hanars
Merge pull request #5404 from broadinstitute/family-structure-loaded-…
0f9eb2e 
…data-only

compute family structure for individuals with loaded data
@hanars
Merge pull request #5403 from broadinstitute/external-project-variant…
2043b98 
…-download

fix download for searches with external projects
@hanars
Merge pull request #5406 from broadinstitute/dependabot/npm_and_yarn/…
c312d1a 
…ui/postcss-8.5.10

Bump postcss from 8.4.31 to 8.5.10 in /ui
@hanars
Merge pull request #5401 from broadinstitute/prioirtized-search-comp-…
af95beb 
…het-bug

add missing inheritance mode to prioritized search
@hanars
Merge pull request #5402 from broadinstitute/comp-het-dup-display
f700cd6 
fix duplicate display for comp het variants
@hanars
hanars merged commit 6c6e8d2 into master Apr 27, 2026
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@hanars