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Dev - #5466

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hanars merged 180 commits into
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dev
May 29, 2026
Merged

Dev#5466
hanars merged 180 commits into
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dev

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@hanars

@hanars hanars commented May 29, 2026 •

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  • All unit test are passing and coverage has not substantively dropped
  • No new dependency vulnerabilities have been introduced
  • Any changes to the docker image have been vetted for potential vulnerabilities and privacy implications
  • If any python requirements are updated, they are noted and here and will be updated before deploying:
    • Adds requirements file for VL
  • Any database migrations are noted here, and will be run before deploying:
    • Fixes initial clickhouse migration, fix will be manually applied in prod later
    • add new clickhouse postgres dicts
    • clear legacy saved variant json
  • All major changes are recorded in the changelog, and the changelog has been updated to reflect the latest release
  • Any new endpoints are explicitly tested to ensure they are only accessible to correctly permissioned users
  • No secrets have been committed
  • Any changes to environment variables or secrets are noted here, and will properly configured before deploying:
  • The following charts will be updated as part of this release:
    • seqr
    • vlm
      • Note: This PR does include updates to the VLM code that generate an invalid docker file so no VLM chart will be released. The seqr app changes are safe to go out without the VLM changes, so the fix for this will be released at a later date

hanars and others added 29 commits May 20, 2026 16:36
Bumps [qs](https://github.com/ljharb/qs) and [express](https://github.com/expressjs/express). These dependencies needed to be updated together.

Updates `qs` from 6.14.0 to 6.15.2
- [Changelog](https://github.com/ljharb/qs/blob/main/CHANGELOG.md)
- [Commits](ljharb/qs@v6.14.0...v6.15.2)

Updates `express` from 4.22.1 to 4.22.2
- [Release notes](https://github.com/expressjs/express/releases)
- [Changelog](https://github.com/expressjs/express/blob/v4.22.2/History.md)
- [Commits](expressjs/express@v4.22.1...v4.22.2)

---
updated-dependencies:
- dependency-name: qs
  dependency-version: 6.15.2
  dependency-type: indirect
- dependency-name: express
  dependency-version: 4.22.2
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>
…ui/multi-f792d6d6d9

Bump qs and express in /ui
Bumps [tmp](https://github.com/raszi/node-tmp) from 0.2.5 to 0.2.7.
- [Changelog](https://github.com/raszi/node-tmp/blob/master/CHANGELOG.md)
- [Commits](raszi/node-tmp@v0.2.5...v0.2.7)

---
updated-dependencies:
- dependency-name: tmp
  dependency-version: 0.2.7
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>
…ui/tmp-0.2.7

Bump tmp from 0.2.5 to 0.2.7 in /ui
…-and-disease

Lookup analalysis status and disease
…rojects

Discovery families for all projects
@hanars
hanars merged commit 7e611fc into master May 29, 2026
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2 participants