Skip to content

Dev - #5505

Merged
hanars merged 51 commits into
masterfrom
dev
Jul 14, 2026
Merged

Dev#5505
hanars merged 51 commits into
masterfrom
dev

Conversation

@hanars

@hanars hanars commented Jul 14, 2026 •
edited
Loading

Copy link
Copy Markdown
Collaborator
  • All unit test are passing and coverage has not substantively dropped
  • No new dependency vulnerabilities have been introduced
  • Any changes to the docker image have been vetted for potential vulnerabilities and privacy implications
  • If any python requirements are updated, they are noted and here and will be updated before deploying:
  • Any database migrations are noted here, and will be run before deploying:
  • All major changes are recorded in the changelog, and the changelog has been updated to reflect the latest release
  • Any new endpoints are explicitly tested to ensure they are only accessible to correctly permissioned users
  • No secrets have been committed
  • Any changes to environment variables or secrets are noted here, and will properly configured before deploying:
  • The following charts will be updated as part of this release:
    • seqr
    • vlm

dependabot Bot and others added 30 commits February 28, 2026 03:11
@dependabot
Bump minimatch in /ui
f9af77a 
Bumps  and [minimatch](https://github.com/isaacs/minimatch). These dependencies needed to be updated together.

Updates `minimatch` from 3.1.2 to 3.1.5
- [Changelog](https://github.com/isaacs/minimatch/blob/main/changelog.md)
- [Commits](isaacs/minimatch@v3.1.2...v3.1.5)

Updates `minimatch` from 5.1.2 to 5.1.9
- [Changelog](https://github.com/isaacs/minimatch/blob/main/changelog.md)
- [Commits](isaacs/minimatch@v3.1.2...v3.1.5)

---
updated-dependencies:
- dependency-name: minimatch
  dependency-version: 3.1.5
  dependency-type: indirect
- dependency-name: minimatch
  dependency-version: 5.1.9
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot
Bump svgo from 2.7.0 to 2.8.2 in /ui
2c2ba26 
Bumps [svgo](https://github.com/svg/svgo) from 2.7.0 to 2.8.2.
- [Release notes](https://github.com/svg/svgo/releases)
- [Commits](svg/svgo@v2.7.0...v2.8.2)

---
updated-dependencies:
- dependency-name: svgo
  dependency-version: 2.8.2
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot
Bump flatted from 3.1.1 to 3.4.2 in /ui
14494eb 
Bumps [flatted](https://github.com/WebReflection/flatted) from 3.1.1 to 3.4.2.
- [Commits](WebReflection/flatted@v3.1.1...v3.4.2)

---
updated-dependencies:
- dependency-name: flatted
  dependency-version: 3.4.2
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot
Bump follow-redirects from 1.15.9 to 1.16.0 in /ui
a6e2250 
Bumps [follow-redirects](https://github.com/follow-redirects/follow-redirects) from 1.15.9 to 1.16.0.
- [Release notes](https://github.com/follow-redirects/follow-redirects/releases)
- [Commits](follow-redirects/follow-redirects@v1.15.9...v1.16.0)

---
updated-dependencies:
- dependency-name: follow-redirects
  dependency-version: 1.16.0
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>
@hanars
simplify loading kwargs
c79e63c
@hanars
update UI
6ed40f9
@hanars
actually pass through new validations
b0c3e61
@dependabot
Bump form-data from 3.0.4 to 3.0.5 in /ui
b50a1c6 
Bumps [form-data](https://github.com/form-data/form-data) from 3.0.4 to 3.0.5.
- [Release notes](https://github.com/form-data/form-data/releases)
- [Changelog](https://github.com/form-data/form-data/blob/master/CHANGELOG.md)
- [Commits](form-data/form-data@v3.0.4...v3.0.5)

---
updated-dependencies:
- dependency-name: form-data
  dependency-version: 3.0.5
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot
Bump launch-editor from 2.9.1 to 2.14.1 in /ui
73469cf 
Bumps [launch-editor](https://github.com/vitejs/launch-editor) from 2.9.1 to 2.14.1.
- [Commits](vitejs/launch-editor@v2.9.1...v2.14.1)

---
updated-dependencies:
- dependency-name: launch-editor
  dependency-version: 2.14.1
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>
@hanars
better unit test
f88ad88
@hanars
Merge pull request #5486 from broadinstitute/dependabot/npm_and_yarn/…
6fde64e 
…ui/launch-editor-2.14.1

Bump launch-editor from 2.9.1 to 2.14.1 in /ui
@hanars
Merge pull request #5485 from broadinstitute/dependabot/npm_and_yarn/…
27bf7ba 
…ui/form-data-3.0.5

Bump form-data from 3.0.4 to 3.0.5 in /ui
@hanars
Merge pull request #5391 from broadinstitute/dependabot/npm_and_yarn/…
4061c31 
…ui/follow-redirects-1.16.0

Bump follow-redirects from 1.15.9 to 1.16.0 in /ui
@hanars
Merge pull request #5357 from broadinstitute/dependabot/npm_and_yarn/…
661b54c 
…ui/flatted-3.4.2

Bump flatted from 3.1.1 to 3.4.2 in /ui
@hanars
Merge pull request #5331 from broadinstitute/dependabot/npm_and_yarn/…
2411203 
…ui/svgo-2.8.2

Bump svgo from 2.7.0 to 2.8.2 in /ui
@hanars
Merge pull request #5320 from broadinstitute/dependabot/npm_and_yarn/…
53c67bf 
…ui/multi-acd8535d99

Bump minimatch in /ui
@hanars
pr feedback
5f2c776
@hanars
Merge branch 'dev' of https://github.com/broadinstitute/seqr into ski…
ce83b8e 
…p-validation-options
@hanars
validate skip validation strings are valid
b5ba447
@hanars
Merge pull request #5488 from broadinstitute/skip-validation-options
95ee029 
Add validation options to data loading UI
@hanars
only update variants with caids
a6ae1df
@hanars
return user counts in stats
e08a433
@hanars
show user stats
e43776c
@hanars
ad ddownload link
69c078a
@hanars
update unit tests
3535174
@hanars
use aggregates and helpr functions for stat aggs
d7e112c
@hanars
better logic abstraction
e97ca6a
@hanars
better variable name
39886b4
@hanars
add sample stats download endpoint
d8c2feb
@hanars
test download
4d148e6
hanars added 21 commits June 25, 2026 17:29
@hanars
pr feedback
ef887da
@hanars
handle multiple anvil statuses for deom projects
36533ce
@hanars
regression test
071b2d2
@hanars
Merge pull request #5493 from broadinstitute/metrics-dashboard
895b798 
Metrics dashboard
@hanars
Merge pull request #5491 from broadinstitute/no-clear-caid
5721251 
only update variants with caids
@hanars
family perm helper
b505af0
@hanars
family specific helper for check perm where possible
7c7aa98
@hanars
set correct permissions for metadata bulk update
c8eb846
@hanars
split get project helper by edit
3fd79a2
@hanars
permission helper cleanup
77d7910
@hanars
clean up
7963ddc
@hanars
has permission refactor
251a6f1
@hanars
rename helper
12ad278
@hanars
better multi project permission check
b7fd17f
@hanars
remove dup import
32b6c68
@hanars
check multiple families permissions
f9b678f
@hanars
fix func return
af6f769
@hanars
fix empty result set bug
ab3698b
@hanars
Merge pull request #5496 from broadinstitute/permission-helper-refactor
98c1f43 
Permission helper refactor
@hanars
fix gene breakdown results in external projects
b982966
@hanars
Merge pull request #5500 from broadinstitute/gene-breakdown-no-access…
2cc51ec 
…-variants

fix gene breakdown results in external projects
@hanars
hanars marked this pull request as ready for review July 14, 2026 16:20
@hanars
hanars merged commit a6d46f2 into master Jul 14, 2026
13 checks passed
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Reviewers

No reviews

Assignees

No one assigned

Labels

None yet

Projects

None yet

Milestone

No milestone

Development

Successfully merging this pull request may close these issues.

1 participant

@hanars