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1. SUMseq_demultiplex SUMseq_demultiplex Public

   Scripts to demultiplex combinatorial multiome experiments data (SUMseq protocol).

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2. scAnnPipe scAnnPipe Public

   single-cell gene expression analysis Pipe

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3. scGPT-tools scGPT-tools Public

   This repo contains scripts that make it much easier to work with scGPT model for single cell research.

   Python

4. scATAC_pipe scATAC_pipe Public

   scATAC-seq analysis tools. Needs motifs, and genes bed files.

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5. celloracle_tools celloracle_tools Public

   Repo for accessible and easy to run pipeline for Cell Oracle (https://github.com/morris-lab/CellOracle) module for GRN inference

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6. scDoRI_tools scDoRI_tools Public

   Repo for accessible and easy to run preprocessing, training and post-training pipelines for scDoRI (https://github.com/bioFAM/scDoRI) module for GRN inference

   Python 1