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Genie import DAG prototype#64

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callachennault wants to merge 82 commits into
cBioPortal:masterfrom
callachennault:aws-proto
Open

Genie import DAG prototype#64
callachennault wants to merge 82 commits into
cBioPortal:masterfrom
callachennault:aws-proto

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@callachennault

@callachennault callachennault commented Nov 27, 2024

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This PR introduces two DAGs: genie_data_dag.py, and import_genie_dag.py.

  • Scripts for the genie_data_dag.py are contained in the scripts/ directory. Also included in this PR is a Dockerfile for the Airflow worker pods, along with an executor config definition and a python requirements file.

  • Scripts for the import_genie_dag.py are contained in the cmo-pipelines repository: Genie DAG import scripts knowledgesystems/cmo-pipelines#1201

  • DISCUSS: Should the import dag scripts be moved to this repo?

callachennault and others added 30 commits September 16, 2024 18:05
Remote scripts accept a scripts directory - workaround for environment variable setting. Airflow environment propagation not passed to actual remote shell
Add arg for passing scripts directory
@callachennault callachennault marked this pull request as ready for review January 15, 2025 20:48
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2 participants