Search results

Clarification on size parameter in moving_garud_h (variant count vs physical bp distance)

Status: Open.

#453 In cggh/scikit-allel;

· GSYH opened on Jun 3, 2026

Any comment on MAF filtering for XP-nSL/XP-EHH results

Status: Open.

#448 In cggh/scikit-allel;

· biozzq opened on Feb 26, 2026

Update docs to recommend bio2zarr for VCF conversion?

Status: Open.

#437 In cggh/scikit-allel;

· jeromekelleher opened on Apr 11, 2025

KeyError: "Unable to open object (unable to open external file, external link file name = 'xxxxxx.h5')"

Status: Open.

#413 In cggh/scikit-allel;

· yifangt-ACRD opened on Jun 14, 2024

Question: Is allel.stats.hudson_fst() actually unbiased following Bhatia et al. 2013?

Status: Open.

#407 In cggh/scikit-allel;

· taprs opened on Feb 13, 2024

Fu and Li's D and Fay & Wu's H

Status: Open.

#392 In cggh/scikit-allel;

· crisamor opened on Mar 9, 2023

reading data chromosome key error

Status: Open.

#387 In cggh/scikit-allel;

· snowformatics opened on Oct 5, 2022

Indexing Error for VariantTable, requires values to be monotonically increasing

Status: Open.

#384 In cggh/scikit-allel;

· npb596 opened on Jul 23, 2022

Behaviour of count_alleles() when all genotypes are missing

Status: Open.

#379 In cggh/scikit-allel;

· alimanfoo opened on Apr 13, 2022

Copying GenotypeDaskArray returns DaskArray

Status: Open.

#377 In cggh/scikit-allel;

· travc opened on Mar 10, 2022

allel.read_vcf RuntimeError: VCF file is missing mandatory header line ("#CHROM...")

Status: Open.

#376 In cggh/scikit-allel;

· nathanvranken opened on Feb 16, 2022

Feature Request - unphased IHS/XPEHH

Status: Open.

#374 In cggh/scikit-allel;

· kullrich opened on Jan 21, 2022