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changok/Glofish
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Files:
parser.sh : shell script parsing data
bio.py : python code which deal with parsed data to generate the chart
<input filename> : a file which you may want to parse using the shell script
<parsed result filename> : expected output file name
<range(base) of ChrPos> : range or base of chromosome position you may concern (i.e. 1000000(mega) base)
How to run:
1. parse the data, removing all obsolete columns
./parser.sh <input filename> <parsed result filename>
i.e. ./parse.sh total.txt parsed_total.txt
2. run the program with parsed result
python bio.py <parsed result filename> <range(base) of ChrPos>
i.e. python bio.py parsed_total.txt 1000000
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