In the publication in Genome Research it says that the preprocessing includes "normalizing read lengths for SNAP alignment by cropping reads of length >75 to 75 bp". However, I am seeing SAM alignments that resulted from SNAP alignments where reads are 100 bp, even though I did not change the length in the configuration file. How can this be fixed? Thank you.
In the publication in Genome Research it says that the preprocessing includes "normalizing read lengths for SNAP alignment by cropping reads of length >75 to 75 bp". However, I am seeing SAM alignments that resulted from SNAP alignments where reads are 100 bp, even though I did not change the length in the configuration file. How can this be fixed? Thank you.