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Add a number of fixes to the IOS data parser #84

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Add a number of fixes to the IOS data parser #84

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a48ca61
fix latitude longitude encoding to float32
JessyBarrette Apr 29, 2024
a321ed7
add time variable attributes
JessyBarrette Apr 29, 2024
1948255
add 2023-003-0003.ctd test file
JessyBarrette Apr 29, 2024
b720753
make explicit variable selection
JessyBarrette Apr 30, 2024
0b241c1
output pandas timestamp foand make missing time error level
JessyBarrette Apr 30, 2024
b565551
handle cases where encoding is defined by parser already
JessyBarrette Apr 30, 2024
8976c0e
add ctd pressure variable vocabulary
JessyBarrette Apr 30, 2024
8ba5636
fix ios file encoding
JessyBarrette Apr 30, 2024
5ac6b98
fix ios vocabulary load
JessyBarrette Apr 30, 2024
796340a
refactor vocabulary handling and add test to make sure apply_func var…
JessyBarrette Apr 30, 2024
351315e
add a test to make sure pressure gets converted when no depth exists
JessyBarrette Apr 30, 2024
c4191e0
isort black
JessyBarrette Apr 30, 2024
dbdcdd6
fix some parsing issues
JessyBarrette Apr 30, 2024
832d86f
add common attributes to flag variables
JessyBarrette May 1, 2024
ce80138
lower log level of bad character
JessyBarrette May 1, 2024
b29136d
refactor a bit vocabulary mapping
JessyBarrette May 1, 2024
ee6eb08
update vocabulary ios_name on duplicated variables
JessyBarrette May 1, 2024
88ba289
ignore date time variabes in vocabulary mapping
JessyBarrette May 1, 2024
8069f80
add a comment column to ios vocabulary and dissolved:oxygen winkler term
JessyBarrette May 1, 2024
ec464d2
fill rename column in ios vocabulary by ios_name if no defined
JessyBarrette May 1, 2024
31ca8a4
drop fillna in main parser
JessyBarrette May 1, 2024
e797adf
add placeholder for chlorophyll variables
JessyBarrette May 1, 2024
542b6ef
ignore start times
JessyBarrette May 1, 2024
40a5b99
add a vocabulary to convert kpascal pressure to dbar
JessyBarrette May 1, 2024
3f8cdf8
lower missing format to info level
JessyBarrette May 1, 2024
34700e7
add RAW section parser
JessyBarrette May 1, 2024
90cb05b
add more default variable mappings
JessyBarrette May 1, 2024
226a851
add a CTD test variable
JessyBarrette May 1, 2024
3330a5b
Merge remote-tracking branch 'origin/development' into fix-74-dfo-ios…
JessyBarrette May 1, 2024
5803408
add absolute:salinity to ios vocablary #82
JessyBarrette May 1, 2024
a1a27b4
isort black formatting
JessyBarrette May 1, 2024
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