Stan model changes#37

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cm401 merged 18 commits into

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stan_model_changes

May 25, 2026

Commits on May 7, 2026

Add data-format ablation analysis script

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Commits on May 10, 2026

Add plotting script for data-format ablation results

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Fix position_dodge and geom_vline arguments in ablation plot

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Add combined multi-panel figure (fig_ablation_combined)

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Use best-fitting distribution per pathogen in combined figure; add position_dodge to Panel A

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Use main-analysis model weights to select best distribution in combined figure

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Add P95 facet to combined figure; unify arm labels; widen forest panel

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Add mu0 and tau panels to decompose opposing forces in combined figure

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Fix mu0 extraction: return data.frame with unname()d quantile values

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Rename ablation arm labels from A/B/C to I/S/F throughout plot script

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Three panel improvements for Figure 4 (ablation combined plot)

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Revert Stan-based tau extraction; filter Figure 4 to tau-complete pathogens

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Commits on May 11, 2026

Commits on May 25, 2026