Skip to content

Pin minimum Snakemake and Python versions; distribute via PyPI and Bioconda #123

@conchoecia

Description

@conchoecia

Users running an old Snakemake version hit a SyntaxError on the retries: rule directive in scripts/odp, which requires Snakemake >= 7.0 (see #88 and #78). Right now nothing enforces a minimum Snakemake or Python version outside of requirements-dev.txt, so anyone who brings their own environment can land on an incompatible version.

Feature request: declare and enforce minimum Snakemake and Python versions, and distribute odp through PyPI and Bioconda. A Bioconda recipe that pins snakemake >=7 would let the conda solver guarantee a compatible environment and prevent this class of parse error for anyone installing that way.

Metadata

Metadata

Assignees

No one assigned

    Labels

    enhancementNew feature or request

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions