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rbh_to_ribbon detangling

enhancementNew feature or requestNew feature or request

Status: Open.

#127 In conchoecia/odp;

· conchoecia opened on May 22, 2026

odp_rbh_to_ribbon: Snakemake >=8 runs run: blocks in spawned subprocesses, hiding the real traceback

enhancementNew feature or requestNew feature or request

Status: Open.

#126 In conchoecia/odp;

· conchoecia opened on May 22, 2026

Pin minimum Snakemake and Python versions; distribute via PyPI and Bioconda

enhancementNew feature or requestNew feature or request

Status: Open.

#123 In conchoecia/odp;

· conchoecia opened on May 22, 2026

pandas 3.x compatibility: groupby().apply() drops grouping column

Status: Open.

#113 In conchoecia/odp;

· conchoecia opened on May 13, 2026

Errors/bug in odp_color_manager and odp_nway_rbh ?

Status: Open.

#109 In conchoecia/odp;

· odethier-ulb opened on Mar 25, 2026

Questions Regarding Ancestral Karyotype Reconstruction Using ODP With 7 Species

Status: Open.

#108 In conchoecia/odp;

· aaannaw opened on Nov 26, 2025

IndexError: list index out of range

Status: Open.

#92 In conchoecia/odp;

· aaannaw opened on Sep 3, 2025

Differences between RBH-gene-coords and Chr-coords

Status: Open.

#87 In conchoecia/odp;

· lyy005 opened on Jul 10, 2025

Getting rbh file for odp_genome_rearrangegment_simulation, and odp_nway_rbh nways question

Status: Open.

#84 In conchoecia/odp;

· mneitzey opened on Jan 25, 2025

How can I customize the color and chromosome order of the plot that odp_nway_rbh output?

Status: Open.

#83 In conchoecia/odp;

· hhzhao713 opened on Oct 10, 2024

MissingInputException in line 289 of .../scripts/odp: Missing input files for rule n_ways_reciprocal_best:

Status: Open.

#80 In conchoecia/odp;

· piamer opened on Aug 7, 2024

hmmsearch --incE 1E-5 --tblout odp/step0-blastp_results/BCnSSimakov2022_against_Csch.hmmsearch --cpu 8 --noali --notextw /Share/user/dzw/software/odp/LG_db/BCnSSimakov2022/BCnSSimakov2022.hmm odp/db/Csch_prots.pep > /dev/null

Status: Open.

#79 In conchoecia/odp;

· dzwzs opened on Jun 26, 2024