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Update correct_10xbarcode.py #6

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Update correct_10xbarcode.py #6

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5 changes: 4 additions & 1 deletion tallytrin/python/correct_10xbarcode.py
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Original file line number Diff line number Diff line change
Expand Up @@ -57,6 +57,8 @@
for key, count in lists:
barcode_lists.append(key)

def is_only_Ts(input_string):
return all(char == 'T' for char in input_string)

def closest_match(input_string, string_list):
closest_match = None
Expand Down Expand Up @@ -91,7 +93,8 @@ def closest_match(input_string, string_list):
else:
pass

outf.write("@%s\n%s\n+\n%s\n" % (name + "_" + barcode + "_" + umi, record.sequence, record.quality))
if not is_only_Ts(umi):
outf.write("@%s\n%s\n+\n%s\n" % (name + "_" + barcode + "_" + umi, record.sequence, record.quality))


outf.close()
Expand Down