First attempt at Pull request from Alex B#1
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Alex B modif of MINFLUX.py (LocRate + LocError) Alex C modif of NPCcalcLM
moved the line: meas = np.array(npcs.measurements, dtype='i') To its correct position
CS implemented AB changes in the def read_temp_csv function. Merges mainly removed comments of AB from ChatGPT tests, also cahnged the way timeformats is handled (no need to modify the config file anymore with CS code).
1- Define timestamp in OnLocalisationRate (experimental/MINFLUX.py) 2- Add timestamp parameter in analyse_locrat_pdframe (Analysis/MINFLUX.py 3- add timestamp argument in the function definition plot_stats_minflux (Analysis/MINFLUX.py)
Add **if statements** in plot_errors (experimental/MINFLUX.py) and plot_stats_minflux (Analysis/MINFLUX.py), to: 1- create temporary files 2- Check is LocError / LocRate temp exists 3- If exists, merges them to always keep the same final csv structure
- Set bins size to 1000 Hz (1 kHz) - Include data timestamp in fig title
Easier to work with individual files than cross checking which one exist and create a single one. Notebook for analysis updated to read from two individual csv
Upon menu click, performs: - Save NPC set (pickle) - Save Measurement (CSV) - Show NPC Geom - Show NPC template fit - Plot Segments - Save NPC segment data
Add the save_dir as an argument
Now saves 2 csv of Stats from all Iteration: 1. Identical to Paraflux data 2. For all Itr
Add a graph output for itr 1, 3, 5, 7, 9
Took CS changes, try to keep arguments required for automatic saving of plots
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Paraflux -> Run Paraflux Analysis