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GenomeSPOT
GenomeSPOT PublicPredict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome
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MicrobeMod
MicrobeMod PublicA toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing
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ORI-marker-screen
ORI-marker-screen PublicSoftware and Data for reproducible analysis for identifying functional origins in a pooled ORI-marker screen
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Transposon-variant-screen
Transposon-variant-screen PublicScripts for processing transposon promoter libraries
Python 2
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electroporation-bayesian-optimization
electroporation-bayesian-optimization PublicAlgorithm for Bayesian optimization of 96-well electroporation
Jupyter Notebook 1
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Repositories
- MicrobeMod Public
A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing
- full-circle-labs-skill Public
Opinionated Claude Code plugin for the Full Circle Labs sequencing API — enforces the billing-confirmation step, pre-flights balances, adds product guidance and location-aware drop-off. Corrected against FCL's official interact-with-fcl-api skill.
- ORI-marker-screen Public
Software and Data for reproducible analysis for identifying functional origins in a pooled ORI-marker screen
- hermes-starter-kit Public
- Fungal_NHEJ_Gene_Identification Public
Fast identification of genes involved in NHEJ in fungal genomes.
- GenomeSPOT Public
Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome
- Piscinibacter_sakaiensis_RB_TnSeq Public
Supporting code for "High-throughput genetics in a microbe that degrades and metabolizes plastic"
- SporosarcinaPasteuriiGenetics Public
This is a repository of code and data associated with a report on S. pasteurii genetic tools.
- electroporation-bayesian-optimization Public
Algorithm for Bayesian optimization of 96-well electroporation
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