Issues

• Can I constrain the residual variance or an IID random effect variance to zero?

  daijiang/phyr#92 · Filter by author pcdjohnson opened on Apr 28, 2025
  4

• Suggested bug fix

  daijiang/phyr#91 · Filter by author plewis opened on Nov 21, 2024

• changing the credible interval

  daijiang/phyr#90 · Filter by author juliettejrubin opened on Jul 5, 2024

• formula clean

  daijiang/phyr#89 · Filter by author daijiang opened on Jun 16, 2024

• Unable to install package

  daijiang/phyr#85 · Filter by author halabikeren opened on Jan 19, 2023

• bayes = T, random terms within random terms

  daijiang/phyr#84 · Filter by author arives opened on Nov 22, 2022

• logLik is not in print.communityPGLMM when family != gaussian

  daijiang/phyr#83 · Filter by author arives opened on Nov 16, 2022
  1

• Support emmeans

  enhancement
  daijiang/phyr#76 · Filter by author rdinnager opened on Aug 4, 2022
  2

• Problem with pglmm Bayes=TRUE model syntax

  daijiang/phyr#73 · Filter by author Flaiba opened on Jul 25, 2022
  14

  

• Predicted values for Poisson distributed data

  daijiang/phyr#72 · Filter by author ammoncorl opened on Jun 15, 2022
  3

• different estimates from glmer and pglmm

  daijiang/phyr#71 · Filter by author heliconius-maps opened on Feb 12, 2022
  1

• Extracting random effect values

  daijiang/phyr#69 · Filter by author GitTFJ opened on Jun 3, 2021

• Three/Four level nested random effects

  daijiang/phyr#68 · Filter by author GitTFJ opened on May 21, 2021
  1

• standardize vcv

  daijiang/phyr#66 · Filter by author daijiang opened on Apr 6, 2021
  1

• "undefined column selected" with pglmm_plot_ranef

  daijiang/phyr#65 · Filter by author jusinowicz opened on Mar 26, 2021
  2

• communityPGLMM error

  daijiang/phyr#64 · Filter by author ebechtold opened on Mar 9, 2021
  6

• covariance matrix invertion by cholesky

  daijiang/phyr#63 · Filter by author lucas-jardim opened on Feb 27, 2021
  1

• To do

  daijiang/phyr#53 · Filter by author daijiang opened on Jul 7, 2020

• predicted values with INLA

  daijiang/phyr#50 · Filter by author arives opened on Jun 17, 2020
  4

• (1|obs) for zero-inflated distributions

  daijiang/phyr#48 · Filter by author arives opened on Jan 31, 2020

• random effect of clade for species in a phylo tree

  daijiang/phyr#47 · Filter by author Jigyasa3 opened on Jan 12, 2020
  1

• communityPGLMM.plot.re()

  daijiang/phyr#40 · Filter by author arives opened on Jul 31, 2019
  4

• math.h not found

  daijiang/phyr#38 · Filter by author daijiang opened on Jun 24, 2019

• Predict for communityPGLMM

  daijiang/phyr#35 · Filter by author vmikk opened on Apr 10, 2019

• communityPGLMM.bayes

  daijiang/phyr#30 · Filter by author arives opened on Oct 11, 2018
  21