Update Main#144

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vincent-maillou wants to merge 154 commits into

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Commits on Jul 16, 2025

updates after comments pull request
lisa-gm
committed

Commits on Jul 23, 2025

Commits on Sep 8, 2025

add overall timer

esmail-abdulfattah
authored and
vincent-maillou
committed
Add timer for covariance_hp

Havard Rue
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lisa-gm
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Add timer for covariance_hp (revision)

Havard Rue
authored and
lisa-gm
committed

Commits on Sep 12, 2025

Commits on Dec 3, 2025

Commits on Dec 9, 2025

CI: Added git-lfs local install script for Daint@ALPS
vincent-maillou
committed

Commits on Feb 16, 2026

REL: adapted version to match released one
vincent-maillou
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CI, DEV: Added conda environment and refactored
vincent-maillou
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DOC: Adapted readme given new installation instructions
vincent-maillou
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DEV, DOC: Renamed and unified the `dalia_base` env
vincent-maillou
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DEV, BUG: Enhanced environment wasn't created in the correct order
vincent-maillou
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DEV: Changed env name to unify with Alex base env
vincent-maillou
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DEV: Added automated installation script for Alex
vincent-maillou
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DEV, BUG: Fixed cupy & mpi4py installation Alex
vincent-maillou
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MAINT: removed unused justfile, corrected readme
vincent-maillou
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DEV, CI: Added environment DAINT + modified nccl imports
vincent-maillou
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DEV, CI: Fixed installation procedure for Alex
vincent-maillou
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MAINT: Adapted doc given rebase
vincent-maillou
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MAINT: Addressed Copilot suggestions in PR
vincent-maillou
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MAINT: Refactored the gitlfs install script inside of the daint_cscs_utils.sh script
vincent-maillou
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MAINT, CI: Add dynamic NCCL path detection
vincent-maillou
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DEV: Added commit flags for stats and solver related developments.
vincent-maillou
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BUG, DEV: Fixed scripts for framework isntallation
vincent-maillou
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DEV: Added preamble Daint install for git-lfs setup
vincent-maillou
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DEV: Fixed the installation procedure for Daint
vincent-maillou
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first steps in the direction of ar1

lisa-gm
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vincent-maillou
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ar1 model runs through. not sure if it computes the correct the thing or not

lisa-gm
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vincent-maillou
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gaussian ar1 seems to be working. still needs a bit of clean up

lisa-gm
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vincent-maillou
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added verbosity level to not always show timer, added initial draft for rescaling function for hyperparameters within prior hyperparameter class and from where it needs to be called

lisa-gm
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vincent-maillou
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updated selected inversion to be dense inverse. probably due to natural ordering and no pivoting numerically quite unstable. only seems to work for very small expamples

lisa-gm
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vincent-maillou
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added doc string and normalizing constant for both gaussian priors

lisa-gm
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vincent-maillou
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first real progress with the reparametrization issue. seems to be working now for minimize() call for gr with gamma prior

lisa-gm
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vincent-maillou
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work in progress, lots of quadrature. lots of test. nothing in core yet

lisa-gm
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vincent-maillou
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incorporating new functions into dalia

lisa-gm
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vincent-maillou
committed
just updated run script

lisa-gm
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vincent-maillou
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fixed it again ...

lisa-gm
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vincent-maillou
committed
no print in broadcasting function

lisa-gm
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vincent-maillou
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removed extra print statements

lisa-gm
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vincent-maillou
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added print gs small example

lisa-gm
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vincent-maillou
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Update theta handling in check_vector_consistency

lisa-gm
authored and
vincent-maillou
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Check backend flags for cupy availability

lisa-gm
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vincent-maillou
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incorporated copilot suggestions

lisa-gm
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vincent-maillou
committed
did it resolve now ...

lisa-gm
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vincent-maillou
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first version seems to be working for some priors

lisa-gm
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vincent-maillou
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first version seems to be working ...

lisa-gm
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vincent-maillou
committed
added first calls in run scripts. seems to look ok at first glance

lisa-gm
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vincent-maillou
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added forgotten file

lisa-gm
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vincent-maillou
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edited tests gaussian quadrature

lisa-gm
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vincent-maillou
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updated test reparametrization

lisa-gm
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vincent-maillou
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added directions beta prior

lisa-gm
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vincent-maillou
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fixed which parameter scale is called, added missing link fucntion, added plotting, modified dalia calls

lisa-gm
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vincent-maillou
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gr seems to work

lisa-gm
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vincent-maillou
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now working for gaussian regression

lisa-gm
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vincent-maillou
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bivariate quadrature + correlation work in progress ...

lisa-gm
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vincent-maillou
committed
ar1 seems to work

lisa-gm
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vincent-maillou
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started adding inverse gamma prior

lisa-gm
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vincent-maillou
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updated priors in AR1 examples. seemed to have fixed the not spd issue which makes sense. before we could have negative variance / precision ...

lisa-gm
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vincent-maillou
committed
just updates run.py files

lisa-gm
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vincent-maillou
committed
fixed problem with scipy triangular solve that was making scipy solver compute incorrect residual

lisa-gm
authored and
vincent-maillou
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fixed return type declarations of functions and removed main in scipy solver

lisa-gm
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vincent-maillou
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found another incorrect return type declaration

lisa-gm
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vincent-maillou
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EXPL: applied stashed changes, mainly small updates in the run scripts that were necessary after updating dalia

lisa-gm
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vincent-maillou
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ENH: incorporated changes from stashed version for gpu, still some errors but need to migrate to alex

Lisa Gaedke-Merzhaeuser
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vincent-maillou
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added gpu compatible version

lisa-gm
authored and
vincent-maillou
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ENH: added automatic folder generation for generate_data.py scripts in g_ar1 and p_ar1

lisa-gm
authored and
vincent-maillou
committed
WIP: Fixing Brainaic on new_stats_capabilities
vincent-maillou
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WIP: modified the flow of the marginal computation to accommodate the GaussianMVC prior (it's a hack for now)
vincent-maillou
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WIP: brainiac marginal computation working
vincent-maillou
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WIP: formating
vincent-maillou
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WIP: I honestly don't know what short is appropriate but I'm putting one. Applied minor stashed changes from my brainiac model work.

lisa-gm
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vincent-maillou
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WIP: updated run and plotting script brainiac

lisa-gm
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vincent-maillou
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EXPL: renamed cov_theta to cov_theta-internal in overlooked example run.py files

lisa-gm
authored and
vincent-maillou
committed
WIP: Added examples to run scripts
vincent-maillou
committed

Commits on Mar 6, 2026

WIP: Fixed typos and solved GPU running for some examples
vincent-maillou
committed

Commits on Mar 18, 2026

Commits on Apr 9, 2026

Commits on Apr 14, 2026

Commits on May 12, 2026

Commits on May 13, 2026

Commits on May 20, 2026

Merge pull request #138 from dalia-project/cleanup_new_stats_capabilities
vincent-maillou
authored