get-glomerulus-data

本项目用于从 PubMed 和 PubMed Central 中自动获取肾小球的标注数据，包括图像（images）和图说（captions）。

This project is used to automatically obtain labeled data of glomeruli, including images and captions, from PubMed and PubMed Central.

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📁 Project Structure

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├── pubmed.ipynb               # 获取 PubMed 中的图文数据 / Obtain data from PubMed
├── pubmed_central.ipynb       # 获取 PubMed Central 中的图文数据 / Obtain data from PubMed Central
├── paper_list.ipynb           # 对数据进行筛选和分类 / Classify and filter the data list
├── requirements.txt           # 项目依赖包列表 / Dependency list
├── .gitignore                 # 忽略规则文件 / Git ignore rules
└── README.md                  # 项目说明文件 / This documentation

For Step 1 in pubmed.ipynb and pubmed_central.ipynb, if you want to change the search keywords, you can modify the following line:

url = f'https://openi.nlm.nih.gov/gridquery?q=glomerulus&m={m}&n={n}&it=xg'

For example： To use multiple keywords, replace the value after q=. For example, to search for "glomerulus glomeruli glomerular", update the line to: url = f'https://openi.nlm.nih.gov/gridquery?q=glomerulus%20glomeruli%20glomerular&m={m}&n={n}&it=xg'

Note: Use %20 to separate multiple keywords in the query string. Each additional keyword must be separated by one %20.

MIT License

Copyright (c) 2025 [Daniel Guo]

Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights
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The above copyright notice and this permission notice shall be included in
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