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10 changes: 6 additions & 4 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -3,12 +3,14 @@ pydt

Pitman Yor diffusion tree sampler

To compile you will need the Boost libraries. e.g. if boost is in ~/boost_1_51_0/ then run:

To compile you will need the Boost libraries. e.g. if boost is in `~/boost_1_51_0/` then run:
```
g++ -O3 main.cpp -I ~/boost_1_51_0/ -o pydt
```

To run on the CCLE data provided here you can then run for example

```
./pydt 0 1.5 sensitivity.txt cell_names.txt 1000 1 1
```

Just running pydt with no args will explain what these inputs are.
Just running pydt with no args will explain what these inputs are.