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Using Proseg for tissue microarrays

Status: Open.

#145 In dcjones/proseg;

· pravinvel98 opened on Mar 11, 2026

Bin export for Visium HD

Status: Open.

#144 In dcjones/proseg;

· visanuwan opened on Mar 6, 2026

Proseg generates a "broken" file for points?

Status: Open.

#143 In dcjones/proseg;

· sshen82 opened on Mar 5, 2026

Replicating analysis on Xenium lung cancer dataset

Status: Open.

#142 In dcjones/proseg;

· caimaco opened on Mar 4, 2026

Proseg exports shapes with a geographic coordinate system

Status: Open.

#140 In dcjones/proseg;

· MeyerBender opened on Feb 26, 2026

Proseg estimated counts

Status: Open.

#139 In dcjones/proseg;

· jairaj-mathur opened on Feb 23, 2026

Importing into Xenium Explorer for protein subpanels

Status: Open.

#138 In dcjones/proseg;

· j-bac opened on Feb 4, 2026

issue with Xenium Ranger 4.0

Status: Open.

#137 In dcjones/proseg;

· BioinfoTongLI opened on Jan 21, 2026

Proseg v3.1.0 SpatialData points: Xenium qv column dropped + coordinate naming is confusing for cropping

Status: Open.

#136 In dcjones/proseg;

· LazDaria opened on Jan 18, 2026

SpatialData input with points + shapes fails to use prior segmentation (--zarr-shape) in v3.0.12

Status: Open.

#133 In dcjones/proseg;

· kimdansay opened on Dec 22, 2025

Can the program produce fake data using the simulator

Status: Open.

#132 In dcjones/proseg;

· hanbin973 opened on Dec 19, 2025

Proseg cannot output results even after convergence (MERSCOPE)

Status: Open.

#129 In dcjones/proseg;

· Finley-Maple opened on Dec 5, 2025