Hello,
Thank you for providing BEAVR. I instaled it and could run your example files.
Unfortunately, i face a problem in performing the Pathway Enrichment or GSEA tools. The other tools work for me.
As far as i understood, the problem seems to be caused by the Gene table output.(?)
I use the Docker and get a Warning like this: "Warning: Error in if: missing value where TRUE/FALSE needed".
In the Gene table not all GeneIDs are linked to a gene name, meaning some gene names are missing.
I work with mouse genes.
Could this be the problem? Do you have an idea what to do?
Do you need anything else to understand my issue?
best
Hello,
Thank you for providing BEAVR. I instaled it and could run your example files.
Unfortunately, i face a problem in performing the Pathway Enrichment or GSEA tools. The other tools work for me.
As far as i understood, the problem seems to be caused by the Gene table output.(?)
I use the Docker and get a Warning like this: "Warning: Error in if: missing value where TRUE/FALSE needed".
In the Gene table not all GeneIDs are linked to a gene name, meaning some gene names are missing.
I work with mouse genes.
Could this be the problem? Do you have an idea what to do?
Do you need anything else to understand my issue?
best