Update quantum research website for deployment

[diannt]

• Merge all reorganization changes to main branch
• Update file structure for GitHub Pages deployment
• Finalize website architecture and design

Summary by CodeRabbit

• New Features

  • Launched a comprehensive quantum research site: homepage, research pages (Teleportation, Temporal Effects, Information Clustering, Architecture), and supplemental pages (About, Publications, Persona profile, Portfolio).
  • Added an interactive Experiments section with three visual experiment modules and a Test Console for automated console checks.

• Style

  • Introduced a full cyberpunk-themed design system and multiple site-wide stylesheets with neon/glow effects and responsive theming.

• Chores

  • Added site configuration files and updated README/LICENSE formatting; updated .gitignore and CNAME.

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📝 Walkthrough

Walkthrough

Adds a complete DIANNT quantum research website: multiple new static HTML pages, a cyberpunk design system and theme CSS, several Three.js visualization modules and supporting JavaScript, site wiring (main/experiments/test runner), and environment/config files.

Changes

Cohort / File(s)	Summary
Configuration & Meta ​.env, .gitignore, CNAME, ~/.claude-code/config/mcp.json	New environment file with GITHUB_PAT, updated .gitignore entries, GitHub Pages CNAME, and MCP config for local AI tooling.
Licensing & Docs LICENSE, README.md, portfolio.html	Reflowed/formatted license, minor README formatting changes, and a trivial portfolio placeholder.
Core Styles — Design System css/cyberpunk-theme.css	New comprehensive cyberpunk design system: variables, UI components (glass-panel, neon-button, holo-card), animations, utilities, and scrollbar/customization.
Styles — Framework & Theme css/quantum-nexus.css, css/quantum-nexus-cyberpunk.css	Added base quantum-nexus stylesheet (layout, components, accessibility, animations) and cyberpunk-specific overrides/visual containers and utilities.
Top-level Pages index.html, research.html, architecture.html, about.html, publications.html, portfolio.html	Added main site pages (home, research, architecture, about, publications) with navigation, visualization containers, and asset links.
Research Topic Pages quantum-teleportation.html, temporal-effects.html, information-clustering.html	Added dedicated topic pages with detailed content, diagrams, math blocks, and placeholders wired to visualizations.
Experiments & QA experiments.html, test-console-errors.html, persona_profile.html	New experiments UI with tabbed experiments and control wiring, a console error test harness across pages, and a persona/analysis dashboard.
Visualization Modules (Three.js) js/quantum-visualization.js, js/teleportation-visualization.js, js/temporal-visualization.js, js/clustering-visualization.js, js/research-methods-visualization.js	Five new visualization modules implementing 3D scenes, animation loops, controls, public window APIs (some), and responsive handling.
UI Behavior & Effects Scripts js/main.js, js/experiments.js, js/cyberpunk-effects.js	Core frontend wiring: mobile menu, publications slider, complexity selector, experiments control layer, and runtime visual effects (neon, glitch, data rain) with effect initializers.
Miscellaneous LICENSE (reflow), other minor additions	Large license reflow and small ancillary changes (CNAME, .env lines, ignore rules).

Sequence Diagram(s)

sequenceDiagram
    participant User
    participant Browser
    participant ExperimentsPage as experiments.html
    participant Controls as Experiments Controls
    participant VizModule as Visualization Module (e.g., Teleportation)
    participant ThreeJS as Three.js Scene

    User->>Browser: Navigate to experiments.html
    Browser->>ExperimentsPage: DOMContentLoaded
    ExperimentsPage->>Controls: initialize tabs & default experiment
    User->>Controls: Click experiment tab / adjust slider / press Start
    Controls->>VizModule: load/init or call API (init..., set..., run...)
    VizModule->>ThreeJS: create scene, camera, renderer, objects
    ThreeJS->>ThreeJS: build geometry, animate loop starts
    Controls->>VizModule: set parameter (e.g., fidelity)
    VizModule->>ThreeJS: update materials/animation parameters
    ThreeJS-->>Browser: render frame updates
    Browser-->>User: updated visualization displayed

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Estimated code review effort

🎯 4 (Complex) | ⏱️ ~60 minutes

Poem

🐰 In neon fields I nudge a star,

I sketch a hop through quantum spar—
With panels glass and circuits bright,
Teleporting dreams into the night,
A little rabbit cheers the light. ✨

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