MoGAAAP v1.2.1

This is a patch release that updates ntSynt-viz and fixes a small bug introduced in v1.2.0.

See CHANGELOG.md for more details.

MoGAAAP v1.2.0

This is a minor release that includes a lot of small changes in the wrapper to allow for full modularity: if e.g. kraken2 shouldn't be run but the rest of the QA should, this is possible now.

See CHANGELOG.md for more details and other changes.

MoGAAAP v1.1.0

This is a minor release that includes ONT-only hifiasm assembly and the optional use of YAHS for using Hi-C for scaffolding.

See CHANGELOG.md for more details and other changes.

MoGAAAP v1.0.2

This is a patch release that includes a small fix to an error that occurred when constructing the same panproteome more than once.

See CHANGELOG.md for more details and other changes.

MoGAAAP v1.0.1

This is a patch release that includes a small change to try to fix the installation path when installing MoGAAAP through pip (which is relevant for creating a bioconda installable package).

See CHANGELOG.md for more details.

MoGAAAP v1.0.0

This is a major new release that includes a wrapper around the pipeline, simplied installation and several dependency version updates.

See CHANGELOG.md for more details.

MoGAAAP v0.2.6

This is a minor release that includes a test_data directory with a quick end-to-end test for new users.

See CHANGELOG.md for more details.

MoGAAAP v0.2.5

This is a minor release dealing with user-friendliness of the code: more explanation was added and sudo rights are no longer needed for construction of SIF containers (they are added to ghcr.io instead).

See CHANGELOG.md for more details.

MoGAAAP v0.2.4

In this minor release, RagTag is added as alternative to ntJoin.

See CHANGELOG.md for more details.

MoGAAAP v0.2.3

In this minor release, MUMmerplots are added to the report with even higher level of detail than already present. This should enable better analysis of these alignment plots.

See CHANGELOG.md for more details.