chore: repo cleanup (static analysis sweep) - #268

Draft

domattioli wants to merge 65 commits into

mainfrom

Commits on Jul 10, 2026

feat(fort14_io): add table-only read mode; tolerate float vertex tokens

domattioli
and
claude
committed
f1b3753
fix(fort14_io): tolerate float-formatted node/element/header ids

domattioli
and
claude
committed
04425d4
chore: refresh DomI pin → cfa7f02

domattioli
authored and
claude
committed
87ead23
fix(smooth_mesh): forward **kwargs so smoother options reach smoothers (#251)

domattioli
authored and
claude
committed
d6e56a1
fix(fort14_io): tolerate prose-annotated NOPE/NBOU headers + truncated boundary blocks (#253)

domattioli
authored and
claude
committed
0a2c11a
feat(geometry): CRS-aware edge length + haversine great-circle distance (#241)

domattioli
authored and
claude
committed
c1923d1
feat(geometry): convex hull, bbox IoU, antimeridian split, Hausdorff distance (#240)

domattioli
authored and
claude
committed
90f3e1b
feat(quality): CFL / Courant number gate for hydrodynamic meshes (#238)

domattioli
authored and
claude
committed
33ae4db
refactor: ratify #187 layer lexicon — verb=peel, noun=layer, skeletonize reserved for medial-axis

domattioli
authored and
claude
committed
fce31f1
chore: prep v2.0.0 release — changelog, version bumps, README lexicon, hero rework

domattioli
authored and
claude
committed
9ec7bd8
docs: regenerate README hero GIF — peel_layers open/close + interpolated truss & FEM (#198)

domattioli
authored and
claude
committed
3ef3de4
feat(hero): real solver playback — history capture hook + seed/truss/FEM/peel animation (#179)

domattioli
authored and
claude
committed
26ee59f
fix(hero): render GIF at dpi 72 (864px) — 6.7MB → 3.8MB so GitHub README renders it

domattioli
authored and
claude
committed
b4cfca1
docs: add spec 002-hero-gif-refinement — README hero GIF rework (pacing, culling, peel reveal, metric keys)

domattioli
authored and
claude
committed
c4fa8a5
docs: resolve spec 002 clarifications — solver-side culling, convert-in-place histogram, mean=red

domattioli
authored and
claude
committed
3f177c5
docs: spec 002 plan artifacts — probe-verified design (solver snapshot kwargs, equal-motion pacing, peel reveal, size budget)

domattioli
authored and
claude
committed
debcd26
docs: spec 002 tasks — 25-task breakdown by user story (TDD solver chain, scripted SC audits)

domattioli
authored and
claude
committed
f9a849c
docs: spec 002 visual-quality checklist — 35-item pre-merge gate

domattioli
authored and
claude
committed
d35308b
docs: spec 002 analyze cycle-1 fixes — peel metrics wiring, hist[-1] provenance, real CHILmesh guard, 18f holds, T026/T027

domattioli
authored and
claude
committed
f9016d0
docs: spec 002 analyze cycle-2 residuals — symmetric k=0 audit, P_truss/T_truss provenance, prose sync

domattioli
authored and
claude
committed
1b5d97b

Commits on Jul 11, 2026

feat(fort15_io): opt-in deep parse of leading scalar block (#249)

domattioli
and
claude
committed
c2fb2ab
test: drift-proof version-string assertion

domattioli
and
claude
committed
f5cd3c6
feat(node_match): cross-mesh node matching + nodal-field deltas (#239)

domattioli
and
claude
committed
cc34234
feat(summary): lazy header read for fort.13 + fort.15 (#201)

domattioli
authored and
claude
committed
3a9c3ef
feat(summary): lazy header read for .npy + .npz (#201)

domattioli
authored and
claude
committed
af19025
feat: additive snapshot_retriangulate kwargs on distmesh2d_warmstart (spec 002 FR-001)

domattioli
authored and
claude
committed
8a47533
feat: hero GIF rework — equal-motion pacing, peel layer reveal w/ stacked histogram, color-keyed metrics (spec 002)

domattioli
authored and
claude
committed
391f865
docs: regenerate README hero GIF — 2.2MB, 265 logical frames, all SC gates green

domattioli
authored and
claude
committed
6aaa2b3
test: close T015 gap — k=0 pixel-equality leg in peel-invariance audit (F-04/N-01)

domattioli
authored and
claude
committed
45aa9d0
feat: freeze final hero peel frame for 5s (operator request)

domattioli
authored and
claude
committed
1c90aed
docs: regenerate hero GIF with 5s final freeze

domattioli
authored and
claude
committed
f632fff
chore: spec 002 pipeline complete — implement phase succeeded

domattioli
authored and
claude
committed
9e6ca8e

Commits on Jul 12, 2026

feat: add gmsh .msh support to summary() lazy reader (#201)

domattioli
and
claude
committed
df21dd2
feat: summary() generic fort.NNN fallback — closes last mesh_read_guard reroute gap (#201)

domattioli
authored and
claude
committed
e6afccd

Commits on Jul 13, 2026

fix: lazy-load heavy surface so fort.14 import stays stdlib-only (#255)

domattioli
authored and
claude
committed
0f6f1c0

Commits on Jul 14, 2026

chore: adopt DomI release-ignore canon (generated ignore blocks)

domattioli
authored and
claude
committed
d8f7a25
docs: measure Rust backend vs C++/Python, fill tbd perf, record recommendation

domattioli
and
claude
committed
bde4a1e
fix: cache Vert2Edge in Rust backend so get_vertex_edges is O(1)

domattioli
and
claude
committed
8efeee6
docs: reflect O(1) query fix + surface backend selection/opt-in to consumers

domattioli
and
claude
committed
5f77347
docs: freeze Rust backend + add prebuilt C++ wheels plan

domattioli
and
claude
committed
4672141
docs: add ready-to-apply snippets appendix to prebuilt C++ wheels plan

domattioli
and
claude
committed
d4583d2
docs: apply peel lexicon + document why Rust frozen (data-structure difference)

domattioli
and
claude
committed
abf8104
chore: prep 2.0.1 release (version bump, changelog, citation)

domattioli
and
claude
committed
5d70a60
chore: correct release version to 1.4.1 (last published was 1.4.0, not 2.0.0)

domattioli
and
claude
committed
5aa7f4e
Merge origin/main into development — reconcile 1.4.x release metadata + sync

domattioli
and
claude
committed
f1444b6
docs: refresh README roadmap — Now=publish C++ wheels (#256), Next=.chil + docs site; drop unshippable conda-forge

domattioli
and
claude
committed
769bcdc
docs: add brief MATLAB→Python bridge note (py. gives the C++ backend, no MEX)

domattioli
and
claude
committed
9735003
docs: unify Zenodo DOI to 21199161 + clickable Citation badges

domattioli
and
claude
committed
2bfb838
chore: sync DomI@bf09fb5 (from cfa7f02)

domattioli
authored and
claude
committed
309d48a
docs: replace stale '57 tests' with 'the full pytest suite' (#247)

domattioli
authored and
claude
committed
a54f88d

Commits on Jul 15, 2026

chore: sync DomI@c430fc2 (from bf09fb5)

domattioli
authored and
claude
committed
adbcbb8

Commits on Jul 16, 2026

test: add .grd summary reroute-target regression guard (#201)

domattioli
authored and
claude
committed
db6f290

Commits on Jul 18, 2026

fix: quad min_angle/max_angle use raw interior angles, not triangle-split (#260)

domattioli
and
claude
committed
183652f

Commits on Jul 19, 2026

fix: expose fort.14 boundary-section presence, empty != absent (#259)

domattioli
and
claude
committed
11e2a49

Commits on Jul 20, 2026

docs: set primary-author affiliation to Unaffiliated per operator (#247)

domattioli
and
claude
committed
a4de4dd

Commits on Jul 21, 2026

docs: add v1.4.0 #187 breaking-rename migration section (#257)

domattioli
and
claude
committed
7768cb4

Commits on Jul 23, 2026

docs: fill Rust ENPAC2003 benchmark cells, mesh now in-environment (#250)

domattioli
and
claude
committed
65c2236

Commits on Jul 24, 2026

docs: spec option-1 medial rule for skeletonize(), flag CONCEPTS.md contradiction (#223)

domattioli
and
claude
committed
f97104e

Commits on Jul 25, 2026

test: run real full_init smoke in cpp-wheel CI, replace hasattr probe (#256)

domattioli
and
claude
committed
811110f

Commits on Jul 26, 2026

ci: add release-gated publish-cpp-wheels.yml (#256 Phase 2)

domattioli
and
claude
committed
75cf769
docs: research.md for mesh cartograms grounded in current API (#219)

domattioli
and
claude
committed
2b850ed

Commits on Jul 27, 2026

docs: mark .planning/project_plan.md stale, point to README live status (#261)

domattioli
and
claude
committed
34e8296

Commits on Aug 31, 2026

chore: remove unused imports and locals from library modules

domattioli
authored and
claude
committed
2a210fb
chore: replace bare except clauses and drop unused imports in scripts

domattioli
authored and
claude
committed
a722f7f
chore: remove unused imports and duplicate imports from the test suite

domattioli
authored and
claude
committed
b57ddbe