This repository has the code for our OPC transcriptome paper.
Please see the methods section of the manuscript for an explanation of the methods used, and the justification of parameter settings in the files below:
- 160629_OPCdgea.Rmd
- Code used for exploratory data analysis, visualisations and GO analysis of bulk data
- 161122_TFdb.Rmd and 161130_TFdb.Rmd
- Exploratory analysis of overlap with Animal TFDb2.0
- 161205_noveltranscripts.Rmd
- Novel transcript processing pipeline
- 161208_IPAcleanup.R
- Cleanup (filtering) of IPA results for bulk data
- 170113_CleanIPAForFigures.RData
- Cleanup (filtering) of IPA results for single cell data