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fixing zero clients obs error in demographics #8

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10 changes: 9 additions & 1 deletion compare_eRegister_vs_hie_data.py
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Original file line number Diff line number Diff line change
Expand Up @@ -7,6 +7,7 @@

from dateutil.relativedelta import relativedelta
from dateutil.rrule import *
import os

# Open the spreadsheet
def compare_eregister_vs_hie_data(demographics_file, hie_file,facility_name):
Expand All @@ -18,10 +19,14 @@ def compare_eregister_vs_hie_data(demographics_file, hie_file,facility_name):
sheet2 = workbook2.worksheets[0]

# Create a list to store the values

wb2 = Workbook()
# set file path
filepath2="/home/openmrs/openmrs-openshr-utils/data/"+facility_name+"_found_HTS_observations.xlsx"

if os.path.exists(filepath2):
os.remove(filepath2)

# save workbook
wb2.save(filepath2)
wb2 = load_workbook(filepath2)
Expand All @@ -41,6 +46,9 @@ def compare_eregister_vs_hie_data(demographics_file, hie_file,facility_name):
file_date=(start_date + relativedelta(weekday=FR(-1))).strftime('%d_%m_%Y')

filepath3="/home/openmrs/openmrs-openshr-utils/data/"+facility_name+"_missing_HTS_observations_"+file_date+".xlsx"
if os.path.exists(filepath3):
os.remove(filepath3)

# save workbook
wb3.save(filepath3)
wb3 = load_workbook(filepath3)
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3 changes: 3 additions & 0 deletions convert_demographics_excel_to_csv.py
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Original file line number Diff line number Diff line change
@@ -1,7 +1,10 @@
#importing pandas as pd
import pandas as pd
import os

def convert_demographics_excel_to_csv(filename_xlsx,filename_csv):
if os.path.exists(filename_csv):
os.remove(filename_csv)

# Read and store content
# of an excel file
Expand Down
26 changes: 16 additions & 10 deletions demograhics.py
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Original file line number Diff line number Diff line change
Expand Up @@ -17,22 +17,25 @@ def demographics(facility_name,sql_exported_file,heina_id):
#########################################
### create a new empty work book
#########################################

if os.path.exists('/home/openmrs/openmrs-openshr-utils/converted.xlsx'):
os.remove('/home/openmrs/openmrs-openshr-utils/converted.xlsx')
# create Workbook object
read_file = pd.read_csv (sql_exported_file,header=None)
read_file.to_csv (sql_exported_file, header=['Identifier', 'givenname', 'familyname', 'address1', 'address2', 'city', 'dateOfBirth', 'phoneNumber', 'identifier', 'gender', 'mothersMaidenName', 'familyname2', 'motherName', 'maritalstatusCode'], index = False)

read_file = pd.read_csv (sql_exported_file)
read_file.to_excel ('/home/openmrs/openmrs-openshr-utils/converted.xlsx', index = False, header=True)

try:
read_file = pd.read_csv (sql_exported_file,header=None)
read_file.to_csv (sql_exported_file, header=['Identifier', 'givenname', 'familyname', 'address1', 'address2', 'city', 'dateOfBirth', 'phoneNumber', 'identifier', 'gender', 'mothersMaidenName', 'familyname2', 'motherName', 'maritalstatusCode'], index = False)

read_file = pd.read_csv (sql_exported_file)
read_file.to_excel ('/home/openmrs/openmrs-openshr-utils/converted.xlsx', index = False, header=True)
except:
print("No patients seen/consulted for this period")
wb2 = Workbook()
# set file path
filepath2="/home/openmrs/openmrs-openshr-utils/"+facility_name+"_HTSNew.xlsx"
filepath2 = path2="/home/openmrs/openmrs-openshr-utils/"+facility_name+"_HTSNew.xlsx"
# if not os.path.exists("./data/"):
# os.mkdir("data")
if os.path.exists(filepath2):
os.remove(filepath2)

# save workbook
wb2.save(filepath2)

Expand All @@ -47,7 +50,10 @@ def demographics(facility_name,sql_exported_file,heina_id):

# set file path
filepath = "/home/openmrs/openmrs-openshr-utils/converted.xlsx"
# load demo.xlsx
# load demo.xlsx
if not os.path.exists(filepath):
wb3 = Workbook()
wb3.save(filepath)
wb = load_workbook(filename = filepath)

# select demo.xlsx
Expand Down
2 changes: 2 additions & 0 deletions demographics_art.py
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Original file line number Diff line number Diff line change
Expand Up @@ -22,6 +22,8 @@ def demographics(facility_name,sql_exported_file,heina_id):
read_file = pd.read_csv (sql_exported_file,header=None)
read_file.to_csv (sql_exported_file, header=['Identifier', 'givenname', 'familyname', 'address1', 'address2', 'city', 'dateOfBirth', 'phoneNumber', 'identifier', 'gender', 'mothersMaidenName', 'familyname2', 'motherName', 'maritalstatusCode'], index = False)

if os.path.exists('/home/openmrs/openmrs-openshr-utils/converted_ART.xlsx'):
os.remove('/home/openmrs/openmrs-openshr-utils/converted_ART.xlsx')
read_file = pd.read_csv (sql_exported_file)
read_file.to_excel ('/home/openmrs/openmrs-openshr-utils/converted_ART.xlsx', index = False, header=True)

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5 changes: 5 additions & 0 deletions find_missing_ART_clients.py
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Original file line number Diff line number Diff line change
@@ -1,6 +1,7 @@
from openempi_session import Openempi_session
from helper import get_patients_from_csv
from helper import write_data_to_csv
import os

def find_missing_clients(csv_filename,facility_name):
filename = csv_filename
Expand All @@ -22,6 +23,10 @@ def find_missing_clients(csv_filename,facility_name):
for patient in missing_patients:
print(patient.givenName+" "+patient.familyName+"\n")

if os.path.exists("/home/openmrs/openmrs-openshr-utils/"+facility_name+"_found_ART_patients.csv"):
os.remove("/home/openmrs/openmrs-openshr-utils/"+facility_name+"_found_ART_patients.csv")
if os.path.exists("/home/openmrs/openmrs-openshr-utils/"+facility_name+"_missing_ART_patients.csv"):
os.remove("/home/openmrs/openmrs-openshr-utils/"+facility_name+"_missing_ART_patients.csv")
write_data_to_csv("/home/openmrs/openmrs-openshr-utils/"+facility_name+"_found_ART_patients.csv", found_patients)
write_data_to_csv("/home/openmrs/openmrs-openshr-utils/"+facility_name+"_missing_ART_patients.csv", missing_patients)
return "/home/openmrs/openmrs-openshr-utils/"+facility_name+"_missing_ART_patients.csv"
6 changes: 5 additions & 1 deletion find_missing_clients.py
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Original file line number Diff line number Diff line change
@@ -1,6 +1,7 @@
from openempi_session import Openempi_session
from helper import get_patients_from_csv
from helper import write_data_to_csv
import os

def find_missing_clients(csv_filename,facility_name):
filename = csv_filename
Expand All @@ -21,7 +22,10 @@ def find_missing_clients(csv_filename,facility_name):
print("=================Missing Patients=================\n")
for patient in missing_patients:
print(patient.givenName+" "+patient.familyName+"\n")

if os.path.exists("/home/openmrs/openmrs-openshr-utils/"+facility_name+"_found_patients.csv"):
os.remove("/home/openmrs/openmrs-openshr-utils/"+facility_name+"_found_patients.csv")
if os.path.exists("/home/openmrs/openmrs-openshr-utils/"+facility_name+"_missing_patients.csv"):
os.remove("/home/openmrs/openmrs-openshr-utils/"+facility_name+"_missing_patients.csv")
write_data_to_csv("/home/openmrs/openmrs-openshr-utils/"+facility_name+"_found_patients.csv", found_patients)
write_data_to_csv("/home/openmrs/openmrs-openshr-utils/"+facility_name+"_missing_patients.csv", missing_patients)
return "/home/openmrs/openmrs-openshr-utils/"+facility_name+"_missing_patients.csv"
5 changes: 5 additions & 0 deletions send_missing_clients.py
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Original file line number Diff line number Diff line change
@@ -1,6 +1,7 @@
from openempi_session import Openempi_session
from helper import get_patients_from_csv
from helper import write_data_to_csv
import os

def send_missing_clients(missing_csv_filename,facility_name):
filename = missing_csv_filename
Expand All @@ -26,6 +27,10 @@ def send_missing_clients(missing_csv_filename,facility_name):
for patient in failed_patients:
print(patient.givenName+" "+patient.familyName+"\n")

if os.path.exists("/home/openmrs/openmrs-openshr-utils/"+facility_name+"_sent_patients.csv"):
os.remove("/home/openmrs/openmrs-openshr-utils/"+facility_name+"_sent_patients.csv")
if os.path.exists("/home/openmrs/openmrs-openshr-utils/"+facility_name+"_failed_patients.csv"):
os.remove("/home/openmrs/openmrs-openshr-utils/"+facility_name+"_failed_patients.csv")
write_data_to_csv("/home/openmrs/openmrs-openshr-utils/"+facility_name+"_sent_patients.csv", sent_patients)
write_data_to_csv("/home/openmrs/openmrs-openshr-utils/"+facility_name+"_failed_patients.csv", failed_patients)