Update from upstream

[damian1996]

Summary:
Conflicts in files:

both modified:   .github/workflows/ci-build-manual-crf.yml
deleted by us:   .github/workflows/ci-build-manual-full.yml
deleted by us:   .github/workflows/ci-build-unstable.yml
both modified:   Dockerfile.crf
both modified:   Dockerfile.delft
both modified:   build.gradle
deleted by them: doc/Benchmarking-elife.md
deleted by them: doc/Benchmarking-pmc.md
both modified:   gradle/wrapper/gradle-wrapper.jar
both modified:   gradle/wrapper/gradle-wrapper.properties
both modified:   gradlew
both modified:   grobid-core/localLibs/grobid-lucene-analysers-0.0.2.jar
both modified:   grobid-core/src/main/java/org/grobid/core/document/TEIFormatter.java
both modified:   grobid-service/src/main/java/org/grobid/service/main/GrobidServiceApplication.java

Multiple changes with upgrading java to version 21, gradle to version 9. In java files the changes were related to formatting issues and coords changes coming from our fork.

I've kept removed .github/workflows/ci-build-manual-full.yml
and .github/workflows/ci-build-unstable.yml

I’m not sure whether we can trust the new JAR files they provided to resolve the conflicts, or whether we should rebuild them ourselves for security reasons.

The image used by them in the dockerfiles seems to have vulnerability problems, not sure what to do about it (according to vscode warning): eclipse-temurin:21.0.10_7-jdk

Test plan:

Issue number/task: