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bug fix ci #91: Commit b8ab5b8 pushed by feiglab
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set velocities after minimization ci #90: Commit c917fec pushed by feiglab
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tstep optional argument ci #89: Commit f64bc07 pushed by feiglab
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option to add/overwrite residue parameters ci #88: Commit 100f30b pushed by feiglab
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changed name ci #87: Commit 54efb5c pushed by feiglab
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analysis code ci #86: Commit e1153f4 pushed by feiglab
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analysis code ci #85: Commit b5fd8f4 pushed by feiglab
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bug fix ci #84: Commit b67f600 pushed by feiglab
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run umbrella sampling ci #83: Commit b51b1ee pushed by feiglab
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new scripts for running umbrella simulations ci #82: Commit 5a3c663 pushed by feiglab
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bug fix ci #81: Commit c4cbe60 pushed by feiglab
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new code for umbrella sampling ci #80: Commit ead0dd1 pushed by feiglab
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fixed DCD reporter ci #79: Commit acf3175 pushed by feiglab
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clean up ci #78: Commit 9e8fd5c pushed by feiglab
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fix DCD writer ci #77: Commit 3d3ff6a pushed by feiglab
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allow negative force in interactions ci #76: Commit ca62e24 pushed by feiglab
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expanded umbrella options ci #75: Commit 02a9e0a pushed by feiglab
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one sided option for umbrella bias ci #74: Commit f4218b8 pushed by feiglab
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added tag to dihedral bias ci #73: Commit 948bb4d pushed by feiglab
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changed to numerical ordering ci #72: Commit f187807 pushed by feiglab
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changed defaults for tstep and gamma ci #71: Commit c949e75 pushed by feiglab
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bug fix ci #70: Commit 0fdbc52 pushed by feiglab
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added repulsion ci #69: Commit 21c9353 pushed by feiglab
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added repulsive option ci #68: Commit 64512e6 pushed by feiglab
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added inter-component repulsion ci #67: Commit 04b0add pushed by feiglab
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