chore(deps): bump fgumi to 0.7.0

[nh13]

What

Bump fgumi from 0.6.0 to 0.7.0 (crates.io). No mako source change needed beyond the version pin — mako flattens fgumi's Sort clap struct directly, and cargo build is clean against the new API.

Why

fgumi 0.7.0 is the sort-concurrency release. PR fulcrumgenomics/fgumi#846 (five commits) took a canonical WGS template-coordinate sort from 387.1s to ~268s (-31%, ~1.44x) on network-attached storage (EBS gp3), with output staying byte-identical and no increase in thread count. mako inherits this for free from the version bump — no code change required.

Test fix

One test broke: sort_and_count_consolidations (in tests/cli.rs) scrapes the engine's "[N spills]" phase-breakdown log line to read back the spilled-run count. fulcrumgenomics/fgumi#826 moved that entire diagnostics block — previously ~99 lines at info!/debug! — behind a hidden --sort-stats flag, off by default, because most of it was noise for a normal run. The fix passes --sort-stats explicitly in the test helper so the line reappears. The flag doesn't show in mako --help (fgumi marks it hide = true), but it still parses through the flattened Sort struct, so no mako-side wiring is needed.

Verification

cargo ci-fmt, cargo ci-lint, and cargo ci-test all clean; 13 tests pass.

Summary by CodeRabbit

• Bug Fixes

  • Updated consolidation test behavior to ensure spill statistics continue to be reported and validated correctly.

• Chores

  • Updated the internal processing dependency to version 0.7.0.

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Reviewing files that changed from the base of the PR and between b975813 and a50fff1.

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📒 Files selected for processing (2)

• Cargo.toml
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📝 Walkthrough

Walkthrough

The PR upgrades fgumi from 0.6.0 to 0.7.0. The consolidation test enables --sort-stats so it can continue to parse spill statistics.

Changes

fgumi upgrade

Layer / File(s)	Summary
Dependency and test adaptation Cargo.toml, tests/cli.rs	The dependency uses fgumi 0.7.0. The consolidation test passes --sort-stats and updates its logging comment.

Estimated code review effort: 2 (Simple) | ~10 minutes

Merge Risk: ⚪ Minimal · up to a50ff

This PR updates the dependency and adjusts one test to enable the dependency’s hidden statistics output; the reported formatting, lint, and test checks pass, so no actionable merge-blocking risk remains.

Poem

A rabbit checks the cargo trail

New fgumi rides the rail
Sort stats bloom in hidden light
Spill counts hop back into sight
Tests thump softly: all is right

🚥 Pre-merge checks | ✅ 5

✅ Passed checks (5 passed)

Check name	Status	Explanation
Description Check	✅ Passed	Check skipped - CodeRabbit’s high-level summary is enabled.
Title check	✅ Passed	The title clearly and concisely describes the primary change: updating the fgumi dependency from 0.6.0 to 0.7.0.
Docstring Coverage	✅ Passed	Docstring coverage is 100.00% which is sufficient. The required threshold is 80.00%. Docstring coverage is scoped to functions touched by this diff. Analyzed 1 functions across 1 files. (1 skipped: 1 …
Linked Issues check	✅ Passed	Check skipped because no linked issues were found for this pull request.
Out of Scope Changes check	✅ Passed	Check skipped because no linked issues were found for this pull request.

Full details: Docstring Coverage

Explanation

Docstring coverage is 100.00% which is sufficient. The required threshold is 80.00%. Docstring coverage is scoped to functions touched by this diff. Analyzed 1 functions across 1 files. (1 skipped: 1 unsupported.)

✨ Finishing Touches 💡 1

⚔️ Resolve merge conflicts 💡

• Resolve merge conflict in branch chore/bump-fgumi-0.7.0

📝 Generate docstrings

• Create stacked PR
• Commit on current branch

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