Add FiberHMM to Dry Lab section#1
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Documents FiberHMM as a DAF-seq nucleosome, MSP, and TF footprint caller. Adds the page to the SUMMARY sidebar and reframes the daf-qc downstream analysis section so it points to FiberHMM as the DAF-native option, with `ft add-nucleosomes` noted as a Fiber-seq nucleosome caller reachable for DAF-seq via the `ft ddda-to-m6a` conversion bridge. Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
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Summary
Adds a new Dry Lab page documenting FiberHMM for DAF-seq analysis.
src/drylab/fiberhmm.md— installation, supported inputs (R/Y, MD, MM/ML,--reference), DddA-led usage example with DddB noted, output tag schema, and bigBed extraction.src/SUMMARY.md— adds the page to the Dry Lab sidebar.src/drylab/daf-qc.md— reframes the "Downstream analysis" section. FiberHMM is presented as the DAF-native nucleosome/MSP/TF footprint caller;ft add-nucleosomes(a Fiber-seq nucleosome caller) is noted as reachable for DAF-seq via theft ddda-to-m6aconversion bridge.FiberHMM: https://github.com/fiberseq/FiberHMM
Test plan
mdbook buildsucceeds with the new page