Name	Name	Last commit message	Last commit date
Latest commit History 48 Commits
CODE/DATA_PROCESSING	CODE/DATA_PROCESSING
GIDEON	GIDEON
GMPD	GMPD
bacteria_files/figure-markdown_github	bacteria_files/figure-markdown_github
bacteria_graph1_files/figure-markdown_github	bacteria_graph1_files/figure-markdown_github
bacteria_processing_3_files	bacteria_processing_3_files
.gitignore	.gitignore
BacDiveR_check.Rmd	BacDiveR_check.Rmd
BacDiveR_check.md	BacDiveR_check.md
Data for Bacillus halotolerans.rds	Data for Bacillus halotolerans.rds
GIDEON_bacterium_dx - 20181219.csv	GIDEON_bacterium_dx - 20181219.csv
GIDEON_read.R	GIDEON_read.R
GIDEON_subset.R	GIDEON_subset.R
GIDEON_subset_bacterial.R	GIDEON_subset_bacterial.R
GIDEON_subset_exclude_carnivores_primates.R	GIDEON_subset_exclude_carnivores_primates.R
GIDEON_subset_non_carnivores.R	GIDEON_subset_non_carnivores.R
GIDEON_subset_ungulates.R	GIDEON_subset_ungulates.R
GMPD.R	GMPD.R
GMPD_bacteria.R	GMPD_bacteria.R
GMPD_pathogen.R	GMPD_pathogen.R
GMPD_traits.R	GMPD_traits.R
README.md	README.md
R_bacteria_host_species_hist_graph1.R	R_bacteria_host_species_hist_graph1.R
R_bacteria_lists_compare.R	R_bacteria_lists_compare.R
R_classify_bacteria.R	R_classify_bacteria.R
R_classify_bacteria_observed.R	R_classify_bacteria_observed.R
R_classify_bacteria_observed_GMPD.R	R_classify_bacteria_observed_GMPD.R
R_graph_bacteria_order_pathogen_status2.R	R_graph_bacteria_order_pathogen_status2.R
R_graph_host_order_pathogen_order.R	R_graph_host_order_pathogen_order.R
R_graph_pathogen_order_family.R	R_graph_pathogen_order_family.R
R_graph_pathogen_order_genus.R	R_graph_pathogen_order_genus.R
R_graph_pathogen_order_host_order.R	R_graph_pathogen_order_host_order.R
R_graph_pathogen_order_host_order1.R	R_graph_pathogen_order_host_order1.R
R_human_zoonotic_non_zoonotic1.R	R_human_zoonotic_non_zoonotic1.R
R_name2taxid.R	R_name2taxid.R
R_name2taxid_GMPD.R	R_name2taxid_GMPD.R
R_species_classify1.R	R_species_classify1.R
animal-dx-parasites - animal-dx-parasites.csv	animal-dx-parasites - animal-dx-parasites.csv
animal-dx-parasites_20190103.csv	animal-dx-parasites_20190103.csv
bacdive_1_species_wide.csv	bacdive_1_species_wide.csv
bacteria.Rmd	bacteria.Rmd
bacteria.Rproj	bacteria.Rproj
bacteria.md	bacteria.md
bacteria_graph1.Rmd	bacteria_graph1.Rmd
bacteria_graph1.md	bacteria_graph1.md
bacteria_host_species_hist_graph.R	bacteria_host_species_hist_graph.R
bacteria_order.R	bacteria_order.R
bacteria_processing_1.Rmd	bacteria_processing_1.Rmd
bacteria_processing_1.Rproj	bacteria_processing_1.Rproj
bacteria_processing_1.md	bacteria_processing_1.md
bacteria_processing_3.Rmd	bacteria_processing_3.Rmd
bacteria_processing_3.md	bacteria_processing_3.md
bacteria_species_out.Rdata	bacteria_species_out.Rdata
bacteria_traits_gmpd_graph.R	bacteria_traits_gmpd_graph.R
bacteria_zdx_gmpd_traits.R	bacteria_zdx_gmpd_traits.R
carnivore-zdx-parasites.csv	carnivore-zdx-parasites.csv
common_p.R	common_p.R
corrplot_bacteria.R	corrplot_bacteria.R
host_pathogen_histogram.R	host_pathogen_histogram.R
host_vector.R	host_vector.R
human_mammal.R	human_mammal.R
mammal_orders_graph.R	mammal_orders_graph.R
mammal_orders_graph_stacked.R	mammal_orders_graph_stacked.R
mammal_zdx_assemble.R	mammal_zdx_assemble.R
msw3-all.csv	msw3-all.csv
ncbi_taxonomy_read.R	ncbi_taxonomy_read.R
ncbi_taxonomy_read_family_genus_species.R	ncbi_taxonomy_read_family_genus_species.R
ncbi_taxonomy_read_order_family_genus.R	ncbi_taxonomy_read_order_family_genus.R
ncbi_taxonomy_read_order_genus_species.R	ncbi_taxonomy_read_order_genus_species.R
packages_bacteria.R	packages_bacteria.R
packages_bacteria2.R	packages_bacteria2.R
parasite_zdx_ncbi.R	parasite_zdx_ncbi.R
parse_species.R	parse_species.R
parse_species_bacteria.R	parse_species_bacteria.R
parse_vector.R	parse_vector.R
prim-zdx-parasites.xls - prim-zdx-parasites.csv	prim-zdx-parasites.xls - prim-zdx-parasites.csv
read_data_pathogen_traits1.R	read_data_pathogen_traits1.R
read_data_pathogen_traits2.R	read_data_pathogen_traits2.R
species_classify.R	species_classify.R
taxize_children.R	taxize_children.R
taxize_children_col.R	taxize_children_col.R
taxize_dev.R	taxize_dev.R
taxizedb_children.R	taxizedb_children.R
taxonomy1.R	taxonomy1.R
taxonomy_correct.R	taxonomy_correct.R
taxonomy_ncbi.R	taxonomy_ncbi.R
taxonomy_ncbi_2.R	taxonomy_ncbi_2.R
taxonomy_ncbi_out.R	taxonomy_ncbi_out.R
taxonomy_ncbi_out2.R	taxonomy_ncbi_out2.R
taxonomy_p1_myTAI.R	taxonomy_p1_myTAI.R

Name

Last commit message

Last commit date

48 Commits

CODE/DATA_PROCESSING

GIDEON

GMPD

bacteria_files/figure-markdown_github

bacteria_graph1_files/figure-markdown_github

bacteria_processing_3_files

.gitignore

BacDiveR_check.Rmd