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- git mv source to beast-bdtree/src/main/java (Maven standard layout) - Add Maven POMs with beast3 dependencies - Only depends on beast-base - Remove Ant build files
Flatten from multi-module (beast-bdtree child) to single-module project following the morph-models convention. Rename artifact to bdtree, switch to beast-base 2.8.0-beta2 from Maven Central, add JPMS module-info and assembly descriptor. Migrate BirthDeathSequentialSampling and BirthDeathSerialSamplingTree inputs from RealParameter to RealScalar spec types. Migrate test to JUnit 5 with RealScalarParam. Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
BDSSLikelihood.xml and BDSSTreeSimulator.xml now use RealScalarParam instead of RealParameter, and target BEAST v2.8.0. Shankarappa.xml has many old-type references beyond BDSS so moved to legacy-2.7/. Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
…emplate Add ci-publish.yml (CI on push/PR, Maven Central publish on v* tag), release.sh for BEAST package ZIP builds, and LGPL 3.0 LICENSE file. Migrate BDSS.xml FXTemplate from beast2 parameter.RealParameter to beast3 spec types (RealScalarParam with domains), spec distributions (Exponential with param), and spec ScaleOperator for parameter operators.
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Summary
RealScalarParamwithPositiveReal,UnitInterval,NonNegativeRealdomains)parameter.RealParameterto specRealScalarParam, specExponentialdistributions (noPriorwrapper), and specScaleOperatorci-publish.yml(CI + Maven Central publish onv*tag),release.sh, and LGPL 3.0LICENSEio.github.compevol:bdtree, release profile with GPG signing and central-publishing-maven-pluginReviewers
@Rong419 @fkmendes
Test plan
mvn verifypasses (1/1 test)mvn package🤖 Generated with Claude Code