Skip to content

Add ontology root annotation #33

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
gouttegd merged 2 commits into from
Mar 6, 2026
Merged

Add ontology root annotation #33

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
d7837f1
Add 'has ontology root' annotation.
gouttegd Mar 2, 2026
43e6626
Commit re-generated files.
gouttegd Mar 2, 2026
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
12 changes: 10 additions & 2 deletions src/ontology/Makefile
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -10,7 +10,7 @@
# More information: https://github.com/INCATools/ontology-development-kit/

# Fingerprint of the configuration file when this Makefile was last generated
CONFIG_HASH= 098026db9e0812afa65ba3dd4cc8678b97eb80ec518df34154f83ee105d84fa8
CONFIG_HASH= 39bf10d65a5aae00d26048e3fb94446ef8bc7217c9ea6f3c7579e01b35231fdc


# ----------------------------------------
Expand Down Expand Up @@ -193,7 +193,7 @@ all_main: $(MAIN_FILES)
# ----------------------------------------


IMPORTS = ro omo
IMPORTS = ro omo iao

IMPORT_ROOTS = $(IMPORTDIR)/merged_import
IMPORT_OWL_FILES = $(foreach n,$(IMPORT_ROOTS), $(n).owl)
Expand Down Expand Up @@ -465,6 +465,14 @@ mirror-omo: | $(TMPDIR)
curl -L $(OBOBASE)/omo.owl --create-dirs -o $(TMPDIR)/omo-download.owl --retry 4 --max-time 200 && \
$(ROBOT) convert -i $(TMPDIR)/omo-download.owl -o $(TMPDIR)/$@.owl


## ONTOLOGY: iao
.PHONY: mirror-iao
.PRECIOUS: $(MIRRORDIR)/iao.owl
mirror-iao: | $(TMPDIR)
curl -L $(OBOBASE)/iao.owl --create-dirs -o $(TMPDIR)/iao-download.owl --retry 4 --max-time 200 && \
$(ROBOT) convert -i $(TMPDIR)/iao-download.owl -o $(TMPDIR)/$@.owl

ALL_MIRRORS = $(patsubst %, $(MIRRORDIR)/%.owl, $(IMPORTS))
MERGE_MIRRORS = true

Expand Down
1 change: 1 addition & 0 deletions src/ontology/fbbi-edit.owl
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -8,6 +8,7 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)

Ontology(<http://purl.obolibrary.org/obo/fbbi.owl>
Import(<http://purl.obolibrary.org/obo/fbbi/imports/merged_import.owl>)
Annotation(<http://purl.obolibrary.org/obo/IAO_0000700> <http://purl.obolibrary.org/obo/FBbi_root_00000000>)
Annotation(<http://purl.org/dc/terms/contributor> <https://orcid.org/0000-0002-6095-8718>)
Annotation(<http://purl.org/dc/terms/contributor> <https://orcid.org/0000-0002-7073-9172>)
Annotation(<http://purl.org/dc/terms/contributor> <https://orcid.org/0000-0002-8841-5870>)
Expand Down
1 change: 1 addition & 0 deletions src/ontology/fbbi-odk.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -8,6 +8,7 @@ import_group:
products:
- id: ro
- id: omo
- id: iao
robot:
reasoner: ELK
repo: fbbi
Expand Down
1 change: 1 addition & 0 deletions src/ontology/imports/iao_terms.txt
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1 @@
IAO:0000700
Loading