Issues

• Undo entire batch if any operation fails within a request

  Feature

  geneontology/minerva#590 · Filter by author balhoff opened on Mar 26, 2026
  

• Noctua GPAD export for interacting taxon (col8) not according to specs

  geneontology/minerva#603 · Filter by author pgaudet opened on Mar 5, 2026
  8

  

• add ability to replace ontology in a live Minerva

  Feature

  geneontology/minerva#584 · Filter by author balhoff opened on Feb 5, 2026
  

• Flag or remove redundant relations

  geneontology/minerva#578 · Filter by author pgaudet opened on Oct 29, 2025
  1

• remove unused class declarations when saving models

  data cleanup
  Bug

  geneontology/minerva#569 · Filter by author balhoff opened on Aug 19, 2025

• support cross-reference field for individuals

  Feature

  geneontology/minerva#557 · Filter by author balhoff opened on May 8, 2025
  

• Subcommand --import-owl-models shows poor performance in CPU-rich environments

  enhancementquestion
  geneontology/minerva#549 · Filter by author kltm opened on Aug 24, 2024
  1

• Make all migrations / ontology maintenance run automatically

  enhancement
  geneontology/minerva#547 · Filter by author kltm opened on Jul 26, 2024
  1

• add action to check conformance with "GPAD ShEx" on each change

  metadataready for testingshex
  Feature

  geneontology/minerva#544 · Filter by author balhoff opened on Jun 6, 2024
  18

  

• Update input/output/transports relations to primary input/primary output in GO-CAMs

  annotation extensionsModel update
  geneontology/minerva#540 · Filter by author vanaukenk opened on Mar 13, 2024
  1

  

• Add feature or workflow to produce both inferred and non-inferred GPADs

  enhancement
  geneontology/minerva#539 · Filter by author kltm opened on Feb 9, 2024
  1

  

• missing ISO annotatins in noctua annotation preview

  question
  geneontology/minerva#532 · Filter by author LiNiMGI opened on Nov 13, 2023
  12

• Don't follow causal property chains for regulation targets when outputting conventional annotations?

  geneontology/minerva#531 · Filter by author ukemi opened on Nov 13, 2023
  1

• Question about how annotation date updates are assigned in Noctua

  questionsave behavior
  geneontology/minerva#594 · Filter by author vanaukenk opened on Nov 10, 2023
  3

• load provided triples file into triplestore before running update command, then unload

  enhancement
  geneontology/minerva#508 · Filter by author balhoff opened on Mar 14, 2023

• Add the number of Molecular events to the report for Reactome loads

  geneontology/minerva#507 · Filter by author ukemi opened on Mar 2, 2023
  2

• return any type mentioned in ShEx in root types

  geneontology/minerva#506 · Filter by author balhoff opened on Feb 2, 2023
  2

• Unique Model Title (random thought)

  geneontology/minerva#493 · Filter by author tmushayahama opened on Jun 14, 2022

• Model Copy: Display all models copied from a given source model in the model info box

  enhancementmetadata
  geneontology/minerva#489 · Filter by author tmushayahama opened on May 27, 2022
  

• Explore alternate methods of eliminating DELETEd models on restarts

  enhancement
  geneontology/minerva#484 · Filter by author kltm opened on May 13, 2022

• Mock run of new (proposed) SOP noctua-model replacement and updates

  geneontology/minerva#483 · Filter by author kltm opened on May 12, 2022
  9

• Duplicate 'root' MF annotations in the GPAD should be filtered

  GAF/GPADroot node annotations
  Bug

  geneontology/minerva#474 · Filter by author ukemi opened on Apr 5, 2022
  1

• Create Annotations for nested processes

  GAF/GPAD
  geneontology/minerva#463 · Filter by author ukemi opened on Mar 8, 2022
  2

• Theiler stages ids not working when submitting to Minerva

  geneontology/minerva#449 · Filter by author tmushayahama opened on Jan 27, 2022
  10

  

• Update minerva to handle “maximal-causal-chain-length” and “display-as-pathway-override”

  geneontology/minerva#448 · Filter by author kltm opened on Jan 22, 2022
  4