Add more scientific research tool detectors

[andrew]

Add detectors for nf-test, nf-core, MultiQC, Dockstore, DVC, cibuildwheel, MyST-Parser, BenchmarkTools.jl, lintr, styler, targets, vdiffr, and tinytest.

Handle recursive multi-dot file patterns such as **/*.nf.test through the bounded file walk, and cover the signals with a research project fixture.

[Copilot]

Pull request overview

This PR expands Brief’s research/scientific tooling detection by adding new knowledge-base tool definitions (across R, Python, Julia, and shared tools), plus a dedicated fixture project and tests to validate those signals. It also fixes recursive glob handling so multi-dot filename patterns (e.g., **/*.nf.test) are checked via the bounded walk rather than the extension cache.

Changes:

• Added knowledge-base detectors for nf-test, nf-core, MultiQC, Dockstore, DVC, cibuildwheel, MyST-Parser, BenchmarkTools.jl, lintr, styler, targets, vdiffr, and tinytest.
• Updated recursive glob optimization to avoid incorrect extension-cache short-circuiting for multi-dot patterns.
• Added a comprehensive testdata/research-tools-project fixture and Go tests covering the new detection signals.

Reviewed changes

Copilot reviewed 26 out of 26 changed files in this pull request and generated no comments.

Show a summary per file

File	Description
detect/detect.go	Refines recursive glob optimization to correctly handle multi-dot suffix patterns via bounded walk.
detect/research_tools_test.go	Adds fixture-based and minimal-signal tests to verify new research tool detectors.
knowledge/_shared/nf-test.toml	Defines nf-test detection including multi-dot recursive patterns.
knowledge/_shared/nf-core.toml	Adds nf-core detection via nf-core metadata file(s).
knowledge/_shared/multiqc.toml	Adds MultiQC detection via common config filenames (including nested).
knowledge/_shared/dvc.toml	Adds DVC detection via standard config/lockfile markers and .dvc/ config.
knowledge/_shared/dockstore.toml	Adds Dockstore detection via standard Dockstore descriptor locations.
knowledge/python/cibuildwheel.toml	Adds cibuildwheel detection via dependency and tool.cibuildwheel key presence.
knowledge/python/myst-parser.toml	Adds MyST-Parser detection via dependency and optional conf.py content signals.
knowledge/julia/benchmarktools.toml	Adds BenchmarkTools.jl detection via Project.toml keys and dependency.
knowledge/r/lintr.toml	Adds lintr detection and command/config metadata.
knowledge/r/styler.toml	Adds styler detection and command metadata.
knowledge/r/targets.toml	Adds targets detection and command/config metadata.
knowledge/r/tinytest.toml	Adds tinytest detection via canonical test file/dir signals and command metadata.
knowledge/r/vdiffr.toml	Adds vdiffr detection via R dependency signals and taxonomy metadata.
testdata/research-tools-project/nf-test.config	Fixture signal for nf-test config.
testdata/research-tools-project/tests/pipeline/main.nf.test	Fixture multi-dot recursive file signal for nf-test (**/*.nf.test).
testdata/research-tools-project/.nf-core.yml	Fixture signal for nf-core metadata.
testdata/research-tools-project/assets/multiqc_config.yml	Fixture nested MultiQC config signal.
testdata/research-tools-project/.github/.dockstore.yml	Fixture Dockstore descriptor signal.
testdata/research-tools-project/.dvc/config	Fixture DVC project config signal.
testdata/research-tools-project/pyproject.toml	Fixture signals for MyST-Parser dependency and cibuildwheel config.
testdata/research-tools-project/Project.toml	Fixture signal for BenchmarkTools dependency in Julia.
testdata/research-tools-project/DESCRIPTION	Fixture signals for R Suggests-based detection (lintr/styler/targets/tinytest/vdiffr).
testdata/research-tools-project/_targets.R	Fixture signal for targets pipeline detection.
testdata/research-tools-project/tests/tinytest.R	Fixture signal for tinytest test runner presence.

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