Get EM back - #888

Open

Antoinehoff wants to merge 220 commits into

mainfrom

Commits on Oct 11, 2025

First commit of the "Get'EM Back" project!
Antoinehoff
committed
a8f228d
Merge remote-tracking branch 'origin/main' into get_em_back
Antoinehoff
committed
007a639
fix merge conflicts
Antoinehoff
committed
1291837

Commits on Oct 15, 2025

add diagnostic for integrated Apar energy.
Antoinehoff
committed
355f6f9
Merge branch 'get_em_back' of https://github.com/ammarhakim/gkeyll into get_em_back
Antoinehoff
committed
ec3574b
remove unused arrays
Antoinehoff
committed
d426e40
bufix: move the apar enery dynvec inside the if em statement.
Antoinehoff
committed
255ac96
kSq in the Ohm's law fem_poisson_perp solver is now updated by releasing and recreating a solver because just rebuilding the matrix introduces memory leaks.
Antoinehoff
committed
3be111e
need to pass bc in the structure to do the release remake poisson perp solver
Antoinehoff
committed
5819a15

Commits on Oct 17, 2025

Commits on Oct 21, 2025

dummy commit to connect with DR #867
Antoinehoff
committed
c955dc8

Commits on Oct 23, 2025

Commits on Oct 24, 2025

Commits on Oct 27, 2025

add empty dg_gk em kernels
Antoinehoff
committed
26e1383
replace phi and dualcurlbhatoverB by apar and apardot
Antoinehoff
committed
bf31f29

Commits on Nov 5, 2025

Commits on Nov 6, 2025

Commits on Nov 7, 2025

Commits on Nov 8, 2025

fix the output of Apar and Apardot, we still have to figure how to handle optimally the flag system and the interaction between the gk_collisionless_id and the gk_field_id...
Antoinehoff
committed
a6e7cfb

Commits on Nov 10, 2025

Commits on Nov 11, 2025

add a new regression test for alfven wave that tries to imitate the g2 lua test 1x1v. It is however 1x2v and nonlinear so we have to figure out still if the results are consistent.
Antoinehoff
committed
1fd7b56

Commits on Nov 12, 2025

this commit is shady but it has ideas on how to step Apar correctly
Antoinehoff
committed
2ad20e5

Commits on Nov 13, 2025

Commits on Nov 14, 2025

Commits on Dec 1, 2025

The weak division memory was not released properly for Ohm's law in 1x
Antoinehoff
committed
7b2bae3

Commits on Dec 2, 2025

Commits on Dec 8, 2025

Commits on Dec 9, 2025

Commits on Dec 10, 2025

Commits on Dec 19, 2025

This version does not work -- Merge remote-tracking branch 'origin/main' into get_em_back
Antoinehoff
committed
72d304f

Commits on Dec 22, 2025

Commits on Dec 23, 2025

remove unused global current density array release in gk_field_fem_release_2x3x
Antoinehoff
committed
b3dccac

Commits on Dec 24, 2025

Commits on Dec 26, 2025

Commits on Dec 29, 2025

Commits on Feb 9, 2026

Add the 3x2v alfven regression test
Antoinehoff
committed
bf10790

Commits on Feb 10, 2026

Remove empty lines
Antoinehoff
committed
41d8875
update calculation of alphavpar in the 1x1v case according to the latest state of the gkylcas routines.
Antoinehoff
committed
8528c0b
indentation fix
Antoinehoff
committed
2c4a660

Commits on Feb 11, 2026

Commits on Feb 12, 2026

remove unused kernel
Antoinehoff
committed
7b819c0
remove unused return zero vpar kernel and handle improve spacing
Antoinehoff
committed
ac10eb7

Commits on Feb 17, 2026

Commits on Feb 18, 2026

These new apar volume kernels use the product rule to compute
Antoinehoff
committed
33731ed

Commits on Feb 27, 2026

Commits on Feb 28, 2026

Commits on Mar 2, 2026

Commits on Mar 31, 2026

refactor some names to be clear about what is axis and what is center values
Antoinehoff
committed
6fdeef4

Commits on Apr 3, 2026

Commits on Apr 6, 2026

Commits on Apr 7, 2026

Commits on Apr 8, 2026

Commits on Apr 9, 2026

the sign of the v parallel surface flux ∇A x b . ∇H term was wrong, thanks @akashukla
Antoinehoff
committed
72a597a

Commits on Apr 11, 2026

this is a refactor version of the kernel, rewritten to match equations as much as possible and reviewed
Antoinehoff
committed
119c3c7

Commits on Apr 13, 2026

Merge remote-tracking branch 'origin/main' into get_em_back_full_upwind
Antoinehoff
committed
45a54f5

Commits on Apr 17, 2026

Commits on Apr 23, 2026

Commits on Apr 24, 2026

Commits on Apr 25, 2026

Commits on Apr 27, 2026

Commits on Apr 28, 2026

Commits on Apr 30, 2026

Commits on May 1, 2026

Merge remote-tracking branch 'origin/poisson_perp_bias' into get_em_back
Antoinehoff
committed
4b1715b
cosmetics
Antoinehoff
committed
c4a9de5
Merge remote-tracking branch 'origin/poisson_perp_bias' into get_em_back
Antoinehoff
committed
c85f670

Commits on May 2, 2026

Commits on May 6, 2026

Commits on May 17, 2026

Commits on May 18, 2026

improve comment
Antoinehoff
committed
f32ad1e
Merge remote-tracking branch 'origin/main' into get_em_back
Antoinehoff
committed
ee8142b

Commits on May 20, 2026

Merge remote-tracking branch 'origin/main' into get_em_back
Antoinehoff
committed
84044a6

Commits on May 22, 2026

add an array to store the gyroaveraged m1 moment for possibly FLR effects in EM
Antoinehoff
committed
3891523

Commits on May 30, 2026

implement a method to remove the flux surface average. For now it is only available for Apardot but one may be interested to use it for phi if we decide to implement the adiabatic electron model.
Antoinehoff
committed
dbfab35

Commits on Jun 1, 2026

Commits on Jun 10, 2026

Commits on Jun 11, 2026

Commits on Jun 17, 2026

Merge remote-tracking branch 'origin/main' into get_em_back
Antoinehoff
committed
b8a6730

Commits on Jun 18, 2026

Commits on Jun 29, 2026

Merge remote-tracking branch 'origin/main' into get_em_back
Antoinehoff
committed
39d1e4b
some merge fix
Antoinehoff
committed
121ba48

Commits on Sep 2, 2026

Merge remote-tracking branch 'origin/main' into get_em_back-main_merge and make the gk 3x2v unit test EM
Antoinehoff
committed
4527210
merge fix
Antoinehoff
committed
c5db4a6
Make the dg gk unit test electromagnetic
Antoinehoff
committed
36905bb

Commits on Sep 8, 2026

We now always apply Apar smoothing, `smooth_apar_z` option is removed.
Antoinehoff
committed
509304c