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Writing into input directory

Status: Open.

#162 In hassansaei/VNtyper;

· euweiss opened on May 31, 2026

Question: Single-end read support? Running with single-end BAM assigns all reads to "output_other.fastq.gz" instead of R1/R2

Status: Open.

#161 In hassansaei/VNtyper;

· ignaciojci opened on May 19, 2026

Update numpy version constraint to allow numpy 2.x

Status: Open.

#155 In hassansaei/VNtyper;

· berntpopp opened on Mar 17, 2026

SHARK module uses hg19 reference regardless of --reference-assembly

Status: Open.

#152 In hassansaei/VNtyper;

· berntpopp opened on Mar 16, 2026

Feedback and inquiries

Status: Open.

#146 In hassansaei/VNtyper;

· fo40225 opened on Dec 30, 2025

feat: linearize or extract values in TSV/CSV values

bugSomething isn't workingSomething isn't working

enhancementNew feature or requestNew feature or request

Status: Open.

#119 In hassansaei/VNtyper;

· berntpopp opened on Mar 5, 2025

feat: implement "Script Mutation Counter"

enhancementNew feature or requestNew feature or request

Status: Open.

#95 In hassansaei/VNtyper;

· berntpopp opened on Feb 4, 2025

Test: expand test coverage for Docker, API, CLI subcommands, and various parameter combos

enhancementNew feature or requestNew feature or request

Status: Open.

#71 In hassansaei/VNtyper;

· berntpopp opened on Dec 25, 2024

Feature request: introduce a rare allele outlier analyis in cohort mode

enhancementNew feature or requestNew feature or request

Status: Open.

#33 In hassansaei/VNtyper;

· berntpopp opened on Nov 23, 2024

Feature request: File Handling Improvements

enhancementNew feature or requestNew feature or request

refactorRefcator the code baseRefcator the code base

Status: Open.

#20 In hassansaei/VNtyper;

· berntpopp opened on Nov 17, 2024