-
Notifications
You must be signed in to change notification settings - Fork 65
Spectral clustering: support pre-calculated affinity matrix, revamp API #1835
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Open
ClaudiaComito
wants to merge
45
commits into
main
Choose a base branch
from
features/1740-Support_pre-calculated_affinity_matrix_in_ht_cluster_Spectral
base: main
Could not load branches
Branch not found: {{ refName }}
Loading
Could not load tags
Nothing to show
Loading
Are you sure you want to change the base?
Some commits from the old base branch may be removed from the timeline,
and old review comments may become outdated.
Open
Changes from all commits
Commits
Show all changes
45 commits
Select commit
Hold shift + click to select a range
3fd75a9
refactor API, add `precomputed` affinity
ClaudiaComito 3114725
adapt tests
ClaudiaComito 075f70f
Merge branch 'main' into features/1740-Support_pre-calculated_affinit…
ClaudiaComito 5764632
Merge branch 'main' into features/1740-Support_pre-calculated_affinit…
ClaudiaComito 441ad2c
introduce eigen_solver parameter
ClaudiaComito bd80333
adapt tests
ClaudiaComito 39209a2
Merge branch 'main' into features/1740-Support_pre-calculated_affinit…
ClaudiaComito 0ec780e
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] 8663b0d
Merge branch 'main' into features/1740-Support_pre-calculated_affinit…
ClaudiaComito 1fb1fb0
add fit_predict
ClaudiaComito 29a995e
Merge branch 'main' into features/1740-Support_pre-calculated_affinit…
ClaudiaComito a5be8d8
Merge branch 'features/1723-Symmetric_eigenvalue_decomposition_and_SV…
ClaudiaComito 8868d34
support eigh decomposition
ClaudiaComito 631a4aa
add argument n_components
ClaudiaComito adac385
Merge branch 'main' into features/1740-Support_pre-calculated_affinit…
ClaudiaComito 7f3897e
Merge branch 'main' into features/1740-Support_pre-calculated_affinit…
ClaudiaComito 46fa36d
return n_components eigenval only
ClaudiaComito d73f185
Merge branch 'main' into features/1740-Support_pre-calculated_affinit…
ClaudiaComito 95f12f7
Merge branch 'main' into features/1740-Support_pre-calculated_affinit…
ClaudiaComito 07c140a
introduce random_state and docs editing
ClaudiaComito 34883fc
introduce method DNDarray.diagonal
ClaudiaComito 8dce6fa
update parameters
ClaudiaComito 7b07624
set default eigendec to zolotarev
ClaudiaComito f932362
fix tests
ClaudiaComito f45c67d
expand tests
ClaudiaComito fc36c8c
spectral_emb instead of __spectral_emb
ClaudiaComito 45486af
reinstate __spectral_amb
ClaudiaComito 0e96ddb
Merge branch 'main' into features/1740-Support_pre-calculated_affinit…
ClaudiaComito fb921ea
Merge branch 'main' into features/1740-Support_pre-calculated_affinit…
ClaudiaComito ee42e63
Update docstring and args defaults
ClaudiaComito ad63d2c
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] 3414f19
Update __spectral_embedding docs
ClaudiaComito 3b51b3c
Edits
ClaudiaComito 3b386a9
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] 116ecef
Remove dead code
ClaudiaComito 82b0eb6
Remove dead code
ClaudiaComito 1c40715
Remove outdated reference to linalg.polar
ClaudiaComito bee92cc
remove dead code
ClaudiaComito f71a075
sklearn API consistency
ClaudiaComito 03bbc01
__spectral_embedding returns embedding only
ClaudiaComito 870dc7a
assess n_components before decomposition
ClaudiaComito 673d43d
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] d5ca6d0
apply standard normalization
ClaudiaComito ee9bdab
Update error message
ClaudiaComito 68a31c4
Refactor comments in spectral.py for clarity
ClaudiaComito File filter
Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
There are no files selected for viewing
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,3 +1,10 @@ | ||
| threshold: medium | ||
| allowed_patterns: | ||
| - 'uses: [A-Za-z-\/]+@[\w\d]+' | ||
|
|
||
| fileignoreconfig: | ||
| - filename: .github/workflows/ci.yaml | ||
| checksum: 3bf095a6ff388eb7aacb80e3b33ed600b377bbce6a97f01ac1579dc702024a13 | ||
| - filename: .github/workflows/ci_full.yaml | ||
| checksum: 54389cc7b9ddd0010ed99d1194da724dbcc51922358f739a5aa30e65e8e2c0e0 | ||
| version: "1.0" | ||
Oops, something went wrong.
Oops, something went wrong.
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.