LivyHail Resource

resource/hail/hail_livy_resource_function.sql

@@ -0,0 +1,58 @@
+CREATE OR REPLACE FUNCTION add_hail_resource(
+  resourceName varchar,
+  resourceURL varchar
+) RETURNS VOID AS $$
+
+
+DECLARE
+  -- SET THE RESOURCE VARIABLES
+  resourceId integer := (select COALESCE(max(id), 1) from IRCT_Resource) + 1;
+
+  -- SET THE RESOURCE PREDICATES
+  predicatetype_filter_id integer := (select COALESCE(max(id), 1) from IRCT_PredicateType) + 1;
+
+  -- SET THE FIELDS
+  gene_field_id integer := (select COALESCE(max(id), 0) from IRCT_Field) + 1;
+  sign_field_id integer := gene_field_id + 1;
+  subject_field_id integer := sign_field_id + 1;
+
+BEGIN
+  -- INSERT THE RESOURCE VARIABLE
+  insert into IRCT_Resource(id, implementingInterface, name, ontologyType) values
+    (resourceId, 'edu.harvard.hms.dbmi.bd2k.picsure.ri.LivyHAIL', resourceName, 'TREE');
+
+  -- INSERT THE RESOURCE PARAMETERS
+  insert into IRCT_resource_parameters(id, name, value) values(resourceId, 'resourceName', resourceName);
+  insert into IRCT_resource_parameters(id, name, value) values(resourceId, 'resourceURL', resourceURL);
+
+
+  -- FILTER predicate
+  insert into IRCT_PredicateType(id, defaultPredicate, description, displayName, name) values
+    (predicatetype_filter_id, false, 'Execute filter predicate', 'filter', 'filter');
+  insert into IRCT_Resource_PredicateType(Resource_Id, supportedPredicates_id) values
+    (resourceId, predicatetype_filter_id);
+
+  -- INSERT FIELDS
+  insert into IRCT_Field(id, description, name, path, required, relationship) values
+    (gene_field_id, 'Gene', 'Gene', 'gene',false,NULL);
+  insert into IRCT_Field_dataTypes(Field_id, dataTypes)
+    values(gene_field_id, 'edu.harvard.hms.dbmi.bd2k.irct.model.resource.PrimitiveDataType:STRING');
+  insert into IRCT_PredicateType_Field(PredicateType_id, fields_id) values
+    (predicatetype_filter_id, gene_field_id);
+
+  insert into IRCT_Field(id, description, name, path, required, relationship) values
+    (sign_field_id, 'Significance', 'Significance', 'significance',false,NULL);
+  insert into IRCT_Field_dataTypes(Field_id, dataTypes)
+    values(sign_field_id, 'edu.harvard.hms.dbmi.bd2k.irct.model.resource.PrimitiveDataType:STRING');
+  insert into IRCT_PredicateType_Field(PredicateType_id, fields_id) values
+    (predicatetype_filter_id, sign_field_id);
+
+  insert into IRCT_Field(id, description, name, path, required, relationship) values
+    (subject_field_id, 'Subject ID', 'Subject ID', 'subject_id',false,NULL);
+  insert into IRCT_Field_dataTypes(Field_id, dataTypes)
+    values(subject_field_id, 'edu.harvard.hms.dbmi.bd2k.irct.model.resource.PrimitiveDataType:STRING');
+  insert into IRCT_PredicateType_Field(PredicateType_id, fields_id) values
+    (predicatetype_filter_id, subject_field_id);
+
+END;
+$$ LANGUAGE plpgsql