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v2.0.0 release - #48

Merged

holsam merged 50 commits into

mainfrom

v2.0.0-release

Oct 23, 2026

Merged

v2.0.0 release#48
holsam merged 50 commits into
mainfrom
v2.0.0-release

Commits on Oct 14, 2026
- fix(analyse): use shell volume for outer diameter
  holsam
  committed
  2dc1ae5
- fix(analyse): correct ellipsoid axes derivation
  holsam
  committed
  990558f
- fix(analyse): return NaN for degenerate axes
  holsam
  committed
  4c99090
- fix(analyse): use same mask for lumen & enclosure
  holsam
  committed
  e1013c6
- chore: add workflow to check version increments
  holsam
  committed
  9afdba5
- chore: add workflow to publish releases
  holsam
  committed
  f96ad3b
- pr: merge holsam/gh-workflows to holsam/v2.0.0-release
  holsam
  authored
  4fc3591
- chore: add github pull request template
  holsam
  committed
  c41cbb8
- Merge branch 'v2.0.0-release' into analysis-improvements
  holsam
  authored
  1925792
- pr: merge holsam/analysis-improvements to holsam/v2.0.0-release
  holsam
  authored
  82e50ca
- fix(label): fix relabelling undoing merges
  holsam
  committed
  b97cf6b
- feat(label): write per-file exclusion tally
  holsam
  committed
  3c23835
- fix(model): read max_workers from model config
  holsam
  committed
  056aa9f
- fix(model): use beam axis at index 0
  holsam
  committed
  70bec53
- chore(model): document BIC caveat & add RMSE flag
  holsam
  committed
  567fd8f
- pr: merge holsam/label-improvements to holsam/v2.0.0-release
  holsam
  authored
  d92cad1
- pr: merge holsam/model-improvements to holsam/v2.0.0-release
  holsam
  authored
  7af77d6
Commits on Oct 15, 2026
- fix(mrc): warn on anisotropic voxel size
  holsam
  committed
  eae11e1
- feat(analyse): flag components cut by z edge
  holsam
  committed
  a80200b
- feat(analyse): derive tomogram membrane thickness
  holsam
  committed
  d4a7278
- fix(label): separate size-floor arc exclusions
  holsam
  committed
  d343b11
- fix(model): warn on single-label input
  holsam
  committed
  a67e949
- feat(mrc): mark fitted output, skip in analyse
  holsam
  committed
  50d6eaf
- pr: merge holsam/misc-improvements to holsam/v2.0.0-release
  holsam
  authored
  94adc25
- fix(tools): use degraded shell for convex hull
  holsam
  committed
  3b3cad4
- fix(tools): record volume-equivalent ground truth
  holsam
  committed
  884634f
- fix(tools): use shell volume in missing-wedge
  holsam
  committed
  70e6d10
- fix(tools): add independent geoproxy baseline
  holsam
  committed
  be618df
- refactor: move figure builders to shared module
  holsam
  committed
  7b06bc5
Commits on Oct 16, 2026
- feat(plot): add python data preprocessing utils
  holsam
  committed
  fdbb5b2
- feat(plot): add svg figure export
  holsam
  committed
  2a21965
- refactor(plot): render viewer figures in python
  holsam
  committed
  df1d477
- feat(plot): add bland-altman agreement plots
  holsam
  committed
  c8b36a3
- docs(plot): update plot command documentation
  holsam
  committed
  fce952b
- pr: merge holsam/figure-improvements to holsam/v2.0.0-release
  holsam
  authored
  81166d7
- pr: merge holsam/tools-improvements to holsam/v2.0.0-release
  holsam
  authored
  dc43c4b
Commits on Oct 19, 2026
- fix(label): reject concentric pairs in merge
  holsam
  committed
  3d73a14
- fix(label): lower merge centre tolerance
  holsam
  committed
  d6ef842
- fix(analyse): don't record z boundary touch as qc
  holsam
  committed
  fdafd7b
- feat(analyse): measure diameter from widest xy
  holsam
  committed
  9e92061
- feat(plot): report summary stats by population
  holsam
  committed
  b05ec6b
- feat(plot): use fitted diameter as size axis
  holsam
  committed
  13454ab
- feat(plot): compare groups at tomogram level
  holsam
  committed
  489ef70
- feat(plot): update stats to be tomogram-level
  holsam
  committed
  299dafb
Commits on Oct 20, 2026
- docs(plot): update plot documentation
  holsam
  committed
  16547fe
- test(plot): fix plot command tests
  holsam
  committed
  9d49092
- test(analyse): fix analyse command tests
  holsam
  committed
  d6eb2fa
- test(config): update config unit tests
  holsam
  committed
  6e67b26
- pr: merge holsam/gen-improvements to holsam/v2.0.0-release
  holsam
  authored
  81c4297
- chore: update evaluator version to v2.0.0
  holsam
  committed
  fdfcd17

Commits

Commits on Oct 14, 2026

Commits on Oct 15, 2026

Commits on Oct 16, 2026

Commits on Oct 19, 2026

Commits on Oct 20, 2026