GitHub - html1101/RELI-Analysis: Reimplementation using Python of RELI (Regulatory Element Locus Intersection), an algorithm for discovering transcription factors (TFs) that bind a significant number of loci associated with a given disease or phenotype (e.g., through a Genome Wide Association study, or GWAS). Part of 02-251 class.

python3 -m flask --app main run OR flask --app main run

Name		Name	Last commit message	Last commit date
Latest commit History 14 Commits
XGR-Implementation		XGR-Implementation
compare_genes		compare_genes
figures		figures
mas		mas
no_ld/EBNA2 - hg19_0302		no_ld/EBNA2 - hg19_0302
output_1		output_1
output_PBC		output_PBC
paper		paper
sample_data		sample_data
templates		templates
.DS_Store		.DS_Store
.gitignore		.gitignore
README.md		README.md
RELI.py		RELI.py
article_steps.md		article_steps.md
associations.jpg		associations.jpg
code_steps.md		code_steps.md
common_snps.csv		common_snps.csv
common_snps.xlsx		common_snps.xlsx
compare_rsids.ipynb		compare_rsids.ipynb
cyglo_bed.png		cyglo_bed.png
genome_info.bed		genome_info.bed
hg19_0303.png		hg19_0303.png
hg19_0697.png		hg19_0697.png
hg_0302.png		hg_0302.png
intersects_type23_analysis.png		intersects_type23_analysis.png
live.main.tex		live.main.tex
main.py		main.py
melanoma.maf.txt		melanoma.maf.txt
single_disease_tf.py		single_disease_tf.py
tfbs_EBNA2.png		tfbs_EBNA2.png
tfbs_MAX.png		tfbs_MAX.png
visualization.py		visualization.py
visualize.ipynb		visualize.ipynb

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