University of North Dakota Hur Laboratory
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PPI-GPT-BERT
PPI-GPT-BERT PublicApplication of Generative Pretrained Transformer (GPT) on identifying protein-protein interactions in biomedical text
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pxpn_neuropathy
pxpn_neuropathy PublicForked from guillermodeandajauregui/pxpn_neuropathy
Scripts for the generation and analysis of Pathway Crosstalk Perturbation Networks in a murine model of diabetic neuropathy
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Vaccine-Adjuvant-LLM
Vaccine-Adjuvant-LLM PublicVaccine Adjuvant identification from biomedical literature using LLM
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SciMiner Legacy (v1.1) - Biomedical literature mining tool. Perl/CGI-based system for gene/protein extraction, interaction mining, and functional enrichment analysis from PubMed literature.
hurlab/SciMiner-Legacy’s past year of commit activity - menopause_open Public
hurlab/menopause_open’s past year of commit activity - chemfuse Public
Multi-database cheminformatics suite integrating PubChem, ChEMBL, UniChem, BindingDB, Open Targets, and SureChEMBL
hurlab/chemfuse’s past year of commit activity - Vignet Public
Vignet — Vaccine-focused Integrative Gene Network from PubMed literature mining using the Vaccine Ontology (VO). Sister project to Ignet.
hurlab/Vignet’s past year of commit activity - Ignet Public
Integrative Gene Network — literature-mined gene interaction database from 848K+ PubMed abstracts with BioBERT scoring, REST API, and MCP endpoint
hurlab/Ignet’s past year of commit activity - ALS-perturbation Public
ALS subtype-specific drug perturbation analysis (C1/C2/C3 + Common) — Clue.io + L1000CDS2 + TxGNN. Manuscript accompaniment.
hurlab/ALS-perturbation’s past year of commit activity - Vaxjo-LLM Public
hurlab/Vaxjo-LLM’s past year of commit activity
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