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isha2106/README.md

Hello! I am Isha Parikh

GROWING, One Codon at a Time 🧬



Coding

👩‍💻 This is a place where curiosity meets code, and the occasional brain fart happens!

Welcome to my GitHub, where I experiment, iterate, and occasionally break things in the name of learning.

About me: On a daily basis, I work with bioinformatics tools, scRNA-seq workflows, and Nextflow pipelines to study cancer and other diseases through an immunology lens (work that has become second nature over time). That foundation has naturally led me to expand into spatial, from transcriptomics to proteomics, as I follow my curiosity into newer and more complex layers of biological data. As these technologies evolve, so does my interest in learning how LLMs can support in reshaping genomics and precision medicine, particularly in helping accelerate the path from data to therapies for patients. And when my mind drifts beyond this, it often wanders into Martian territory, thinking about space biology and how life can survive in environments far beyond Earth.

This page captures my journey of trying, failing, learning, and (hopefully) succeeding as I push boundaries and take on new challenges.

Got a cool idea? Let’s tinker and build something awesome together! 🚀

Languages and Tools

R Python Bash SQL GenBank Ensembl UCSC Genome Browser UniProt PDB InterPro GEO KEGG dbSNP ClinVar 1000 Genomes ENCODE TCGA Samtools Minimap2 HISAT2 STAR BWA Bowtie BLAST GATK FreeBayes Strelka MuTect2 IGV DESeq2 EdgeR Salmon Kallisto SPAdes InterProScan BLAST2GO Clustal Omega QIIME2 AutoDock Rosetta Bioconductor Galaxy Biopython BEDTools VCFtools


Connect with me

ishaparikh98


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  1. stjude-biohackathon/KIDS25-Team22 stjude-biohackathon/KIDS25-Team22 Public

    Genesis: Multi-Modal Agentic AI for Cancer Variant Effect Prioritization

    Python 4 4

  2. BioITHackathons/GlycoEnzyme-Expression-Atlas BioITHackathons/GlycoEnzyme-Expression-Atlas Public

    R 1 1

  3. Cancer-Classifier-ML-Model Cancer-Classifier-ML-Model Public archive

    R

  4. AgarwalVibha/rare-disease-diagnosis AgarwalVibha/rare-disease-diagnosis Public

    JavaScript

  5. collaborativebioinformatics/OncoLearn collaborativebioinformatics/OncoLearn Public

    Cancer Biomarker Discovery

    Jupyter Notebook 7 6

  6. ShinyCell2 ShinyCell2 Public

    Forked from the-ouyang-lab/ShinyCell2

    ShinyCell2 is a lightweight R package for building interactive, shareable apps to explore single-cell multi-omics, scATAC-seq and spatial transcriptomics data with customizable, publication-ready v…

    R