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Add the Zenodo concept DOI to repository citation metadata - #254

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jakeberv merged 2 commits into
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codex/add-zenodo-concept-doi
Oct 17, 2026
Merged

jakeberv merged 2 commits into
mainfrom
codex/add-zenodo-concept-doi

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@jakeberv

@jakeberv jakeberv commented Oct 17, 2026 •

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Add a README badge and software-archive link for the bifrost Zenodo concept DOI, 10.5281/zenodo.23268805, and record it in CITATION.cff as identifying all archived versions. The preferred MEE paper citation remains in press until formal publication; the passerine dataset's versioned DOI continues to identify the exact source data.

Validation

  • cffr::cff_validate() passed; the concept DOI and SVG badge both returned HTTP 200.
  • Rebuilt source commit: b3940d7c3cd2c8dec9392433358ea6823832b7bb, checked 2026-10-17 UTC.
  • Full R CMD check --as-cran --run-donttest, including PDF and HTML manuals: 0 errors, 0 warnings, 1 NOTE (unable to verify current time).
  • 2,980 passing assertions, zero test warnings/failures, and 138 expected skips.
  • The 101-page PDF passed qpdf --check.
  • Fresh isolated library; existing dependencies accessed read-only; at most two workers, with one numerical thread per worker. Dependency DESCRIPTION hashes remained unchanged.
  • Archive SHA-256: 846b0c6b9c97c51f16f8937919c687959eb28a6fd7a2a2dd35a3249348dc1c70.
  • Only the README and generated packaging timestamp differ from the previous checked source archive. CITATION.cff remains excluded from CRAN builds and included in GitHub archives.
  • git diff --check passed. The subsequent evidence commit changes only files excluded from source archives; package code and tests are unchanged.

The rebuilt archive supersedes the previously checked archive. Current evidence and checklist are recorded in tools/releases/0.2.2.md; local archive, logs, checksum and manual are preserved in output/release-0.2.2-pr254-check/run-lnj56l9_/.

No merge, CRAN submission, tag, or release publication. Issue #231 remains deferred. Existing installations, local outputs, and other branches are preserved.

Copilot AI balanced review requested due to automatic review settings October 17, 2026 05:15

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🟢 Approval recommended

The narrowly scoped documentation and metadata changes are consistent and have no identified blocking issues.

No open issues 🎉

What changed in this PR

Adds the Zenodo concept DOI to repository documentation and citation metadata, identifying all archived versions of bifrost.

Changes:

  • Adds a README DOI badge and software-archive link.
  • Records the concept DOI in CITATION.cff without changing the preferred paper citation.
File Description
README.md Adds the Zenodo badge and archive explanation.
CITATION.cff Adds the concept DOI identifier and description.

Review effort: Balanced

@codecov

codecov Bot commented Oct 17, 2026

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Codecov Report

✅ All modified and coverable lines are covered by tests.

📢 Thoughts on this report? Let us know!

@jakeberv
jakeberv merged commit 053b2a7 into main Oct 17, 2026
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@jakeberv
jakeberv deleted the codex/add-zenodo-concept-doi branch October 17, 2026 05:43
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2 participants